RNA–Protein interactions for RNA: ENST00000425537.1

HMGB4-201, Transcript of high mobility group box 4, humanhuman

TSL 1 (best)

Gene HMGB4, Length 630 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4-201ENST00000425537 CACNA1SQ13698 1873 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 E7EWF7 191 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 APPP05067 770 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 CRY2Q49AN0 593 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 ZNF804AQ7Z570 1209 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 FBXO33Q7Z6M2 555 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 MAGEB6Q8N7X4 407 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 NCOA7Q8NI08 942 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 TMX4Q9H1E5 349 aaPredicted RBP11.19□□□□□ -0.62
HMGB4-201ENST00000425537 ANKIB1Q9P2G1 1089 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 DUOX1Q9NRD9 1551 aa11.19□□□□□ -0.62
HMGB4-201ENST00000425537 MYH13Q9UKX3 1938 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 A0A0G2JLW4 131 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 TCRBV5S4A2TA0A5A2 114 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 PATL2C9JE40 543 aaKnown RBP11.18□□□□□ -0.62
HMGB4-201ENST00000425537 FGAP02671 866 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 ATP2B4P23634 1241 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 HOXA10P31260 410 aaPredicted RBP11.18□□□□□ -0.62
HMGB4-201ENST00000425537 MCM5P33992 734 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 C15orf52Q6ZUT6 534 aaKnown RBP11.18□□□□□ -0.62
HMGB4-201ENST00000425537 SLC51AQ86UW1 340 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 FBXL16Q8N461 479 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 FAM84BQ96KN1 310 aaPredicted RBP11.18□□□□□ -0.62
HMGB4-201ENST00000425537 SYT17Q9BSW7 474 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 PUS7LQ9H0K6 701 aaKnown RBP11.18□□□□□ -0.62
HMGB4-201ENST00000425537 CNNM2Q9H8M5 875 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 RAI14Q9P0K7 980 aa11.18□□□□□ -0.62
HMGB4-201ENST00000425537 DHX16O60231 1041 aaKnown RBP11.17□□□□□ -0.62
HMGB4-201ENST00000425537 BAG4O95429 457 aaKnown RBP11.17□□□□□ -0.62
HMGB4-201ENST00000425537 BRD1O95696 1058 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 CPA1P15085 419 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 DPEP1P16444 411 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 PDE6BP35913 854 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 GYG1P46976 350 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 CSPP1Q1MSJ5 1256 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 Q6ZUG5 572 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 CERS3Q8IU89 383 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 CCDC83Q8IWF9 413 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 WDR66Q8TBY9 1149 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 STRBPQ96SI9 672 aaKnown RBP11.17□□□□□ -0.62
HMGB4-201ENST00000425537 LLPHQ9BRT6 129 aaKnown RBP11.17□□□□□ -0.62
HMGB4-201ENST00000425537 BRIP1Q9BX63 1249 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 NAPBQ9H115 298 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 ZNF219Q9P2Y4 722 aaPredicted RBP11.17□□□□□ -0.62
HMGB4-201ENST00000425537 ABCF2Q9UG63 623 aa11.17□□□□□ -0.62
HMGB4-201ENST00000425537 KIF13BQ9NQT8 1826 aa11.16□□□□□ -0.62
HMGB4-201ENST00000425537 MAGEB6P1A0A0J9YX57 407 aa11.16□□□□□ -0.62
HMGB4-201ENST00000425537 KLRG2A4D1S0 409 aaPredicted RBP11.16□□□□□ -0.62
HMGB4-201ENST00000425537 MBD4O95243 580 aa11.16□□□□□ -0.62
HMGB4-201ENST00000425537 NCLP19338 710 aaKnown RBP11.16□□□□□ -0.62
HMGB4-201ENST00000425537 CYP7A1P22680 504 aa11.16□□□□□ -0.62
HMGB4-201ENST00000425537 ALDH1B1P30837 517 aa11.16□□□□□ -0.62
HMGB4-201ENST00000425537 GSTO1P78417 241 aa11.16□□□□□ -0.62
HMGB4-201ENST00000425537 EXOSC10Q01780 885 aaKnown RBP11.16□□□□□ -0.62
HMGB4-201ENST00000425537 TOB2Q14106 344 aaPredicted RBP11.16□□□□□ -0.62
HMGB4-201ENST00000425537 GSE1Q14687 1217 aa11.16□□□□□ -0.62
HMGB4-201ENST00000425537 ZNF274Q96GC6 653 aaPredicted RBP11.16□□□□□ -0.62
HMGB4-201ENST00000425537 KRT23Q9C075 422 aa11.16□□□□□ -0.62
HMGB4-201ENST00000425537 RNF41Q9H4P4 317 aaPredicted RBP11.16□□□□□ -0.62
HMGB4-201ENST00000425537 LAMA4Q16363 1823 aa11.16□□□□□ -0.62
HMGB4-201ENST00000425537 SALL1Q9NSC2 1324 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 TAF1P21675 1872 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 STX6O43752 255 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 TRAK2O60296 914 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 CHGBP05060 677 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 LDHCP07864 332 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 NT5C2P49902 561 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 HMGN5P82970 282 aaKnown RBP11.15□□□□□ -0.62
HMGB4-201ENST00000425537 ME3Q16798 604 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 NAA16Q6N069 864 aaPredicted RBP11.15□□□□□ -0.62
HMGB4-201ENST00000425537 GIMAP6Q6P9H5 292 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 C2CD5Q86YS7 1000 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 NOL10Q9BSC4 688 aaKnown RBP11.15□□□□□ -0.62
HMGB4-201ENST00000425537 MTA3Q9BTC8 594 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 AGXT2Q9BYV1 514 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 GGA1Q9UJY5 639 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 TPCN1Q9ULQ1 816 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 MAST2Q6P0Q8 1798 aa11.15□□□□□ -0.62
HMGB4-201ENST00000425537 COL4A1P02462 1669 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 SNAP23O00161 211 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 PFKFB2O60825 505 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 ZSCAN22P10073 491 aaPredicted RBP11.14□□□□□ -0.63
HMGB4-201ENST00000425537 PCP11498 1178 aaKnown RBP11.14□□□□□ -0.63
HMGB4-201ENST00000425537 NPR1P16066 1061 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 GJB2P29033 226 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 TDO2P48775 406 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 SART3Q15020 963 aaKnown RBP11.14□□□□□ -0.63
HMGB4-201ENST00000425537 SLFNL1Q499Z3 407 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 SLF2Q8IX21 1173 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 SP8Q8IXZ3 490 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 IFNL3Q8IZI9 196 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 BRF1Q92994 677 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 GTF3C6Q969F1 213 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 TMEM87BQ96K49 555 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 CRNKL1Q9BZJ0 848 aaKnown RBP11.14□□□□□ -0.63
HMGB4-201ENST00000425537 PODXL2Q9NZ53 605 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 SLC4A4Q9Y6R1 1079 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 CCDC88AQ3V6T2 1871 aa11.14□□□□□ -0.63
HMGB4-201ENST00000425537 MYO5AQ9Y4I1 1855 aaKnown RBP11.14□□□□□ -0.63
HMGB4-201ENST00000425537 PRC1O43663 620 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms