RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 PCDH1Q08174 1060 aa9.94□□□□□ -0.82
LINC01040-201ENST00000425048 CCNJLQ8IV13 435 aa9.94□□□□□ -0.82
LINC01040-201ENST00000425048 GALNT12Q8IXK2 581 aa9.94□□□□□ -0.82
LINC01040-201ENST00000425048 ZFYVE1Q9HBF4 777 aa9.94□□□□□ -0.82
LINC01040-201ENST00000425048 ANGEL1Q9UNK9 670 aaKnown RBP9.94□□□□□ -0.82
LINC01040-201ENST00000425048 BTBD11A6QL63 1104 aa9.93□□□□□ -0.82
LINC01040-201ENST00000425048 ZNF211Q13398 564 aaPredicted RBP9.93□□□□□ -0.82
LINC01040-201ENST00000425048 ZNF423Q2M1K9 1284 aa9.93□□□□□ -0.82
LINC01040-201ENST00000425048 HP1BP3Q5SSJ5 553 aaPredicted RBP9.93□□□□□ -0.82
LINC01040-201ENST00000425048 EZH1Q92800 747 aaPredicted RBP9.93□□□□□ -0.82
LINC01040-201ENST00000425048 TBC1D32Q96NH3 1257 aa9.93□□□□□ -0.82
LINC01040-201ENST00000425048 LIN7BQ9HAP6 207 aa9.93□□□□□ -0.82
LINC01040-201ENST00000425048 ADGRE2Q9UHX3 823 aa9.93□□□□□ -0.82
LINC01040-201ENST00000425048 CARNS1A5YM72 827 aa9.92□□□□□ -0.82
LINC01040-201ENST00000425048 NEFLP07196 543 aa9.92□□□□□ -0.82
LINC01040-201ENST00000425048 POU4F3Q15319 338 aa9.92□□□□□ -0.82
LINC01040-201ENST00000425048 NRSN2Q9GZP1 204 aa9.92□□□□□ -0.82
LINC01040-201ENST00000425048 GTF3C3Q9Y5Q9 886 aa9.92□□□□□ -0.82
LINC01040-201ENST00000425048 MAOBP27338 520 aa9.91□□□□□ -0.82
LINC01040-201ENST00000425048 GRIA4P48058 902 aa9.91□□□□□ -0.82
LINC01040-201ENST00000425048 MSMPQ1L6U9 139 aa9.91□□□□□ -0.82
LINC01040-201ENST00000425048 SPRED3Q2MJR0 410 aa9.91□□□□□ -0.82
LINC01040-201ENST00000425048 ZAR1Q86SH2 424 aa9.91□□□□□ -0.82
LINC01040-201ENST00000425048 SHISA5Q8N114 240 aa9.91□□□□□ -0.82
LINC01040-201ENST00000425048 DDX54Q8TDD1 881 aaKnown RBP9.91□□□□□ -0.82
LINC01040-201ENST00000425048 TCF12Q99081 682 aa9.91□□□□□ -0.82
LINC01040-201ENST00000425048 PRKAG2Q9UGJ0 569 aa9.91□□□□□ -0.82
LINC01040-201ENST00000425048 BRPF3Q9ULD4 1205 aa9.91□□□□□ -0.82
LINC01040-201ENST00000425048 CYP26A1O43174 497 aa9.9□□□□□ -0.82
LINC01040-201ENST00000425048 ADH5P11766 374 aa9.9□□□□□ -0.82
LINC01040-201ENST00000425048 ADMP35318 185 aa9.9□□□□□ -0.82
LINC01040-201ENST00000425048 RAD18Q9NS91 495 aa9.9□□□□□ -0.82
LINC01040-201ENST00000425048 CCDC39Q9UFE4 941 aa9.9□□□□□ -0.82
LINC01040-201ENST00000425048 EGFL7Q9UHF1 273 aa9.9□□□□□ -0.82
LINC01040-201ENST00000425048 ICMTO60725 284 aa9.89□□□□□ -0.83
LINC01040-201ENST00000425048 PRNPP04156 253 aa9.89□□□□□ -0.83
LINC01040-201ENST00000425048 YBX3P16989 372 aaKnown RBP eCLIP9.89□□□□□ -0.83
LINC01040-201ENST00000425048 MAP7Q14244 749 aa9.89□□□□□ -0.83
LINC01040-201ENST00000425048 DUSP27Q5VZP5 1158 aa9.89□□□□□ -0.83
LINC01040-201ENST00000425048 ABI1Q8IZP0 508 aa9.89□□□□□ -0.83
LINC01040-201ENST00000425048 KIAA0319Q5VV43 1072 aa9.88□□□□□ -0.83
LINC01040-201ENST00000425048 DYMQ7RTS9 669 aa9.88□□□□□ -0.83
LINC01040-201ENST00000425048 FBXL18Q96ME1 805 aa9.88□□□□□ -0.83
LINC01040-201ENST00000425048 ACTL7BQ9Y614 415 aa9.88□□□□□ -0.83
LINC01040-201ENST00000425048 NFICP08651 508 aa9.87□□□□□ -0.83
LINC01040-201ENST00000425048 B4GALNT3Q6L9W6 998 aa9.87□□□□□ -0.83
LINC01040-201ENST00000425048 CORO1BQ9BR76 489 aa9.87□□□□□ -0.83
LINC01040-201ENST00000425048 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP9.86□□□□□ -0.83
LINC01040-201ENST00000425048 CTSBP07858 339 aa9.86□□□□□ -0.83
LINC01040-201ENST00000425048 CYP27A1Q02318 531 aa9.86□□□□□ -0.83
LINC01040-201ENST00000425048 AKAP4Q5JQC9 854 aa9.86□□□□□ -0.83
LINC01040-201ENST00000425048 VSIG10LQ86VR7 867 aa9.86□□□□□ -0.83
LINC01040-201ENST00000425048 KRTAP9-9Q9BYP9 154 aa9.86□□□□□ -0.83
LINC01040-201ENST00000425048 KRTAP9-4Q9BYQ2 154 aa9.86□□□□□ -0.83
LINC01040-201ENST00000425048 BSDC1Q9NW68 430 aaPredicted RBP9.86□□□□□ -0.83
LINC01040-201ENST00000425048 FAM170BA6NMN3 283 aa9.85□□□□□ -0.83
LINC01040-201ENST00000425048 RAB6AP20340 208 aa9.85□□□□□ -0.83
LINC01040-201ENST00000425048 USPL1Q5W0Q7 1092 aa9.85□□□□□ -0.83
LINC01040-201ENST00000425048 GLYCTKQ8IVS8 523 aa9.85□□□□□ -0.83
LINC01040-201ENST00000425048 TP53INP2Q8IXH6 220 aa9.85□□□□□ -0.83
LINC01040-201ENST00000425048 GATA6Q92908 595 aa9.85□□□□□ -0.83
LINC01040-201ENST00000425048 EHD4Q9H223 541 aa9.85□□□□□ -0.83
LINC01040-201ENST00000425048 C1orf115Q9H7X2 142 aa9.85□□□□□ -0.83
LINC01040-201ENST00000425048 B3GALT4O96024 378 aa9.84□□□□□ -0.83
LINC01040-201ENST00000425048 ASPAP45381 313 aa9.84□□□□□ -0.83
LINC01040-201ENST00000425048 PDE3BQ13370 1112 aa9.84□□□□□ -0.83
LINC01040-201ENST00000425048 SEMA6CQ9H3T2 930 aa9.84□□□□□ -0.83
LINC01040-201ENST00000425048 NDUFB5O43674 189 aa9.83□□□□□ -0.84
LINC01040-201ENST00000425048 CPNE3O75131 537 aaKnown RBP9.83□□□□□ -0.84
LINC01040-201ENST00000425048 ECM1Q16610 540 aa9.83□□□□□ -0.84
LINC01040-201ENST00000425048 TRIM56Q9BRZ2 755 aaKnown RBP9.83□□□□□ -0.84
LINC01040-201ENST00000425048 ACSS3Q9H6R3 686 aa9.83□□□□□ -0.84
LINC01040-201ENST00000425048 FAM105AQ9NUU6 356 aa9.83□□□□□ -0.84
LINC01040-201ENST00000425048 USTQ9Y2C2 406 aa9.83□□□□□ -0.84
LINC01040-201ENST00000425048 H3BRB1 525 aa9.82□□□□□ -0.84
LINC01040-201ENST00000425048 ITPKAP23677 461 aa9.82□□□□□ -0.84
LINC01040-201ENST00000425048 GSX1Q9H4S2 264 aaPredicted RBP9.82□□□□□ -0.84
LINC01040-201ENST00000425048 ZNF576Q9H609 170 aa9.82□□□□□ -0.84
LINC01040-201ENST00000425048 TUT1Q9H6E5 874 aaKnown RBP9.82□□□□□ -0.84
LINC01040-201ENST00000425048 AP4E1Q9UPM8 1137 aa9.82□□□□□ -0.84
LINC01040-201ENST00000425048 ECEL1O95672 775 aa9.81□□□□□ -0.84
LINC01040-201ENST00000425048 PTPN12Q05209 780 aaKnown RBP9.81□□□□□ -0.84
LINC01040-201ENST00000425048 CITED4Q96RK1 184 aa9.81□□□□□ -0.84
LINC01040-201ENST00000425048 LRRC4CQ9HCJ2 640 aa9.81□□□□□ -0.84
LINC01040-201ENST00000425048 SYNGAP1Q96PV0 1343 aa9.81□□□□□ -0.84
LINC01040-201ENST00000425048 AOC2O75106 756 aa9.8□□□□□ -0.84
LINC01040-201ENST00000425048 SERPINB4P48594 390 aa9.8□□□□□ -0.84
LINC01040-201ENST00000425048 AP3B2Q13367 1082 aa9.8□□□□□ -0.84
LINC01040-201ENST00000425048 ORC1Q13415 861 aa9.8□□□□□ -0.84
LINC01040-201ENST00000425048 PDE3AQ14432 1141 aa9.8□□□□□ -0.84
LINC01040-201ENST00000425048 NFXL1Q6ZNB6 911 aa9.8□□□□□ -0.84
LINC01040-201ENST00000425048 CBLL1Q75N03 491 aa9.8□□□□□ -0.84
LINC01040-201ENST00000425048 ZNF765Q7L2R6 523 aa9.8□□□□□ -0.84
LINC01040-201ENST00000425048 AGBL5Q8NDL9 886 aa9.8□□□□□ -0.84
LINC01040-201ENST00000425048 ZC3H7BQ9UGR2 993 aaKnown RBP9.8□□□□□ -0.84
LINC01040-201ENST00000425048 ARHGAP4P98171 946 aa9.79□□□□□ -0.84
LINC01040-201ENST00000425048 FAM129BQ96TA1 746 aa9.79□□□□□ -0.84
LINC01040-201ENST00000425048 NPHS2Q9NP85 383 aa9.79□□□□□ -0.84
LINC01040-201ENST00000425048 RPS26P11Q5JNZ5 115 aaPredicted RBP9.78□□□□□ -0.84
LINC01040-201ENST00000425048 OGFOD3Q6PK18 319 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms