RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 FYB2Q5VWT5 728 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 TEKT1Q969V4 418 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 ACSBG1Q96GR2 724 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 TMX1Q9H3N1 280 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 LAMC3Q9Y6N6 1575 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 GOLGA8CPA6NN73 597 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 ESPNB1AK53 854 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 ZNF165P49910 485 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 NBPF1Q3BBV0 1214 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 SEC62Q99442 399 aaKnown RBP7.69□□□□□ -1.18
SCN1A-204ENST00000423058 VCXQ9H320 206 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 CTAGE15A4D2H0 777 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 CTAGE8P0CG41 777 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 CTAGE6Q86UF2 777 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 CTAGE4Q8IX94 777 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 ATP2A3Q93084 1043 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 CCDC42Q96M95 316 aa7.69□□□□□ -1.18
SCN1A-204ENST00000423058 CTTNBP2Q8WZ74 1663 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 UVSSAQ2YD98 709 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 C16orf45Q96MC5 204 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 H0YIN7 160 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 NBPF3Q9H094 633 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 ZNF408Q9H9D4 720 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 MAGI1Q96QZ7 1491 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 OATP04181 439 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 LGSNQ5TDP6 509 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 DPY19L2Q6NUT2 758 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 C10orf67Q8IYJ2 551 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 VCX3BQ9H321 246 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 SAMD15Q9P1V8 674 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 TUBBP07437 444 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 TNNC1P63316 161 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 DZIP3Q86Y13 1208 aaKnown RBP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 SELENOSQ9BQE4 189 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 ZKSCAN3Q9BRR0 538 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 CDCA7Q9BWT1 371 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 PANK2Q9BZ23 570 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 WDR46O15213 610 aaKnown RBP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 ZBED4O75132 1171 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 AKNAD1Q5T1N1 836 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 ELMSAN1Q6PJG2 1045 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 FAM200AQ8TCP9 573 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 PSPC1Q8WXF1 523 aaKnown RBP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 SRRTQ9BXP5 876 aaKnown RBP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 NKIRAS1Q9NYS0 192 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 NCOA1Q15788 1441 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 PALM3A6NDB9 673 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 UBXN1Q04323 297 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 DCAF17Q5H9S7 520 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 SND1Q7KZF4 910 aaKnown RBP eCLIP7.68□□□□□ -1.18
SCN1A-204ENST00000423058 HVCN1Q96D96 273 aa7.68□□□□□ -1.18
SCN1A-204ENST00000423058 PABPC4Q13310 644 aaKnown RBP eCLIP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 CCDC121Q6ZUS5 278 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 SV2BQ7L1I2 683 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 WDR66Q8TBY9 1149 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 FAM8A1Q9UBU6 413 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 DENND2AQ9ULE3 1009 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 NSFL1CQ9UNZ2 370 aaKnown RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 UTP11Q9Y3A2 253 aaKnown RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 SLFN5Q08AF3 891 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 ISM2Q6H9L7 571 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 HAUS8Q9BT25 410 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 BACH2Q9BYV9 841 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 SNRKQ9NRH2 765 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 PRKAG2Q9UGJ0 569 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 GRM8O00222 908 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 IL2RBP14784 551 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 HSPA1LP34931 641 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 KRT9P35527 623 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 SP4Q02446 784 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 PPP1R21Q6ZMI0 780 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 MAGEB6Q8N7X4 407 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 GTF3C6Q969F1 213 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 FEZ2Q9UHY8 353 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 TYW5A2RUC4 315 aaKnown RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 CCDC169A6NNP5 214 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 VAV2P52735 878 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 OTUD7BQ6GQQ9 843 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 CNNM4Q6P4Q7 775 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 ZNF449Q6P9G9 518 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 SMCR8Q8TEV9 937 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 KCNK9Q9NPC2 374 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 DENND4BO75064 1496 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 H7C1D1 291 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 ACTN4O43707 911 aaKnown RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 SLC12A2P55011 1212 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 EP400NLQ6ZTU2 488 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 CDC37L1Q7L3B6 337 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 CCDC25Q86WR0 208 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 ANKFY1Q9P2R3 1169 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 RUSC2Q8N2Y8 1516 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 CETN3O15182 167 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 PRPF6O94906 941 aaKnown RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 SDCCAG8Q86SQ7 713 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 LMTK3Q96Q04 1460 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 CASQ2O14958 399 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 ECM2O94769 699 aaPredicted RBP7.67□□□□□ -1.18
SCN1A-204ENST00000423058 SLC9C2Q5TAH2 1124 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 CPLX4Q7Z7G2 160 aa7.67□□□□□ -1.18
SCN1A-204ENST00000423058 PAG1Q9NWQ8 432 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms