RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 SLC39A6Q13433 755 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 SLC39A14Q15043 492 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 TERF2Q15554 542 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 E4F1Q66K89 784 aaPredicted RBP12.74□□□□□ -0.37
LIMS1-207ENST00000422797 KRT28Q7Z3Y7 464 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 NFATC2IPQ8NCF5 419 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 IFNKQ9P0W0 207 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 CEP126Q9P2H0 1117 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.74□□□□□ -0.37
LIMS1-207ENST00000422797 ZMYM6O95789 1325 aa12.74□□□□□ -0.37
LIMS1-207ENST00000422797 PRC1O43663 620 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 SLFN14P0C7P3 912 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 KIF23Q02241 960 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-207ENST00000422797 ELF2Q15723 593 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 DPCR1Q3MIW9 517 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 FBXO38Q6PIJ6 1188 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 OLFM4Q6UX06 510 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 MB21D2Q8IYB1 491 aaPredicted RBP12.73□□□□□ -0.37
LIMS1-207ENST00000422797 APPBP2Q92624 585 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 FTOQ9C0B1 505 aaKnown RBP eCLIP12.73□□□□□ -0.37
LIMS1-207ENST00000422797 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.73□□□□□ -0.37
LIMS1-207ENST00000422797 NCOA5Q9HCD5 579 aaKnown RBP12.73□□□□□ -0.37
LIMS1-207ENST00000422797 NLRP2Q9NX02 1062 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 DACH1Q9UI36 760 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 DNAI1Q9UI46 699 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 TJP1Q07157 1748 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 MEGF6O75095 1541 aa12.73□□□□□ -0.37
LIMS1-207ENST00000422797 KLF18A0A0U1RQI7 1052 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 A0A1B0GVL5 298 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 PFKFB1P16118 471 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 CABP4P57796 275 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 FANCCQ00597 558 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 TRDNQ13061 729 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 ARID5BQ14865 1188 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 ARMCX5Q6P1M9 558 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 MPHOSPH8Q99549 860 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 TRMT1Q9NXH9 659 aaKnown RBP12.72□□□□□ -0.37
LIMS1-207ENST00000422797 AXIN2Q9Y2T1 843 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 ATRNO75882 1429 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 C1orf167Q5SNV9 1468 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 NEDD4P46934 1319 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 A0A1B0GUL7 405 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 ARHGAP6O43182 974 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 CUTAO60888 179 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 SYKP43405 635 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 TUBB4BP68371 445 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 NCAPHQ15003 741 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 CT47A1Q5JQC4 288 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-207ENST00000422797 TTC39AQ5SRH9 613 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 AXDND1Q5T1B0 1012 aaPredicted RBP12.72□□□□□ -0.37
LIMS1-207ENST00000422797 HPSEQ9Y251 543 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 CLIC4Q9Y696 253 aa12.72□□□□□ -0.37
LIMS1-207ENST00000422797 STK36Q9NRP7 1315 aa12.71□□□□□ -0.37
LIMS1-207ENST00000422797 SETD1BQ9UPS6 1966 aaKnown RBP12.71□□□□□ -0.37
LIMS1-207ENST00000422797 EFCAB8A8MWE9 144 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 M0R2C6 588 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 FOSBP53539 338 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 TEX35Q5T0J7 233 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 GORABQ5T7V8 394 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 HOMER1Q86YM7 354 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 MNS1Q8NEH6 495 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 WASF1Q92558 559 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 UBXN4Q92575 508 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 CCDC34Q96HJ3 373 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 ZNF512BQ96KM6 892 aaPredicted RBP12.71□□□□□ -0.38
LIMS1-207ENST00000422797 TMX1Q9H3N1 280 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.71□□□□□ -0.38
LIMS1-207ENST00000422797 CALCOCO1Q9P1Z2 691 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 STRCQ7RTU9 1775 aa12.71□□□□□ -0.38
LIMS1-207ENST00000422797 DCCP43146 1447 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 COL18A1P39060 1754 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 ATP5J2-PTCD1G3V325 749 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 ZNF213O14771 459 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 PTCD1O75127 700 aaKnown RBP12.7□□□□□ -0.38
LIMS1-207ENST00000422797 UBASH3AP57075 661 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 GUCY1B3Q02153 619 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 TRIM29Q14134 588 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 TTF1Q15361 905 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-207ENST00000422797 JAKMIP3Q5VZ66 844 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 LMOD2Q6P5Q4 547 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 TMCO3Q6UWJ1 677 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 SYT10Q6XYQ8 523 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 VSTM4Q8IW00 320 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 TMEM87BQ96K49 555 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 ZNF219Q9P2Y4 722 aaPredicted RBP12.7□□□□□ -0.38
LIMS1-207ENST00000422797 ANGEL1Q9UNK9 670 aaKnown RBP12.7□□□□□ -0.38
LIMS1-207ENST00000422797 HPS5Q9UPZ3 1129 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 UBR2Q8IWV8 1755 aa12.7□□□□□ -0.38
LIMS1-207ENST00000422797 C4AP0C0L4 1744 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 C4BP0C0L5 1744 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 SERPINC1P01008 464 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 TOP1P11387 765 aaKnown RBP12.69□□□□□ -0.38
LIMS1-207ENST00000422797 TRIM28Q13263 835 aaKnown RBP12.69□□□□□ -0.38
LIMS1-207ENST00000422797 GNL2Q13823 731 aaKnown RBP12.69□□□□□ -0.38
LIMS1-207ENST00000422797 TUBB2AQ13885 445 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 RESP18Q5W5W9 173 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 TRIML1Q8N9V2 468 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 OSBP2Q969R2 916 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 ORAI2Q96SN7 254 aa12.69□□□□□ -0.38
LIMS1-207ENST00000422797 TUBB2BQ9BVA1 445 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms