RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 E7EWF7 191 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 WDHD1O75717 1129 aaPredicted RBP12.32□□□□□ -0.44
USP54-204ENST00000422491 TAF7LQ5H9L4 462 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 BRAPQ7Z569 592 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 DSCC1Q9BVC3 393 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 PDE11AQ9HCR9 933 aa12.32□□□□□ -0.44
USP54-204ENST00000422491 LMO7Q8WWI1 1683 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 RGPD8O14715 1765 aaPredicted RBP12.31□□□□□ -0.44
USP54-204ENST00000422491 IGKV5-2P06315 115 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 USP5P45974 858 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 EPHA10Q5JZY3 1008 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 NBPF6Q5VWK0 638 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 LEKR1Q6ZMV7 388 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 TC2NQ8N9U0 490 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 ZFP91Q96JP5 570 aaPredicted RBP12.31□□□□□ -0.44
USP54-204ENST00000422491 NBPF4Q96M43 638 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 ANKZF1Q9H8Y5 726 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 FANCLQ9NW38 375 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 VPS18Q9P253 973 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 HPSEQ9Y251 543 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 ANO1Q5XXA6 986 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 ICE2Q659A1 982 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 DDX46Q7L014 1031 aaKnown RBP12.31□□□□□ -0.44
USP54-204ENST00000422491 FBXL16Q8N461 479 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 CHMP4CQ96CF2 233 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 C8orf76Q96K31 380 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 RAB21Q9UL25 225 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 USP54Q70EL1 1684 aa12.31□□□□□ -0.44
USP54-204ENST00000422491 KIF28PB7ZC32 967 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 CHST3Q7LGC8 479 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 KBTBD3Q8NAB2 608 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 COPRSQ9NQ92 184 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 TMEM2Q9UHN6 1383 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 PRAMEF22A3QJZ6 481 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 CUTAO60888 179 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 MAGEA9P43362 315 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 SYKP43405 635 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 CHMP4BP1P59074 171 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 TFCP2Q12800 502 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 FOXR1Q6PIV2 292 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 SRGAP1Q7Z6B7 1085 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 ZBTB9Q96C00 473 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 C19orf44Q9H6X5 657 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 PALLDQ8WX93 1383 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 RFX5P48382 616 aaPredicted RBP12.3□□□□□ -0.44
USP54-204ENST00000422491 MCM6Q14566 821 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 HDXQ7Z353 690 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 MSANTD4Q8NCY6 345 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 CCDC12Q8WUD4 166 aaPredicted RBP12.3□□□□□ -0.44
USP54-204ENST00000422491 DBNDD2Q9BQY9 259 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 L1RE1Q9UN81 338 aa12.3□□□□□ -0.44
USP54-204ENST00000422491 A0A1B0GUL7 405 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 N4BP1O75113 896 aaKnown RBP12.29□□□□□ -0.44
USP54-204ENST00000422491 PNOCQ13519 176 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 SLC39A14Q15043 492 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 GOLGA6L1Q8N7Z2 621 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 PNKPQ96T60 521 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 MRPL44Q9H9J2 332 aaKnown RBP12.29□□□□□ -0.44
USP54-204ENST00000422491 GJB4Q9NTQ9 266 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 FAM237AA0A1B0GTK4 181 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 ADKP55263 362 aaKnown RBP12.29□□□□□ -0.44
USP54-204ENST00000422491 KIF23Q02241 960 aaPredicted RBP12.29□□□□□ -0.44
USP54-204ENST00000422491 PTPN12Q05209 780 aaKnown RBP12.29□□□□□ -0.44
USP54-204ENST00000422491 NOM1Q5C9Z4 860 aaKnown RBP12.29□□□□□ -0.44
USP54-204ENST00000422491 SHC4Q6S5L8 630 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 SYNE3Q6ZMZ3 975 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 PACS2Q86VP3 889 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 DESI2Q9BSY9 194 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 IRX2Q9BZI1 471 aaPredicted RBP12.29□□□□□ -0.44
USP54-204ENST00000422491 ZSWIM4Q9H7M6 989 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 HELLSQ9NRZ9 838 aa12.29□□□□□ -0.44
USP54-204ENST00000422491 DDX58O95786 925 aaKnown RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 HSPD1P10809 573 aaKnown RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 BMP6P22004 513 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 MARCKSP29966 332 aaPredicted RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 GTF2A1P52655 376 aaPredicted RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 KARSQ15046 597 aaKnown RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 AKAP4Q5JQC9 854 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 SPECC1LQ69YQ0 1117 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 METTL16Q86W50 562 aaKnown RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 GPHNQ9NQX3 736 aaPredicted RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 GEMIN8Q9NWZ8 242 aaKnown RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 FAN1Q9Y2M0 1017 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 NEURL1BA8MQ27 555 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 EIF3CLB5ME19 914 aaKnown RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 CDC27P30260 824 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 PDE4BQ07343 736 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 MPRIPQ6WCQ1 1025 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 FOXP4Q8IVH2 680 aaPredicted RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 PDILTQ8N807 584 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 RGS22Q8NE09 1264 aa12.28□□□□□ -0.44
USP54-204ENST00000422491 EIF3CQ99613 913 aaKnown RBP12.28□□□□□ -0.44
USP54-204ENST00000422491 POTEB2H3BUK9 544 aa12.27□□□□□ -0.44
USP54-204ENST00000422491 EIF3JO75822 258 aaKnown RBP12.27□□□□□ -0.44
USP54-204ENST00000422491 AIMP1Q12904 312 aaKnown RBP12.27□□□□□ -0.44
USP54-204ENST00000422491 PDIA6Q15084 440 aa12.27□□□□□ -0.44
USP54-204ENST00000422491 OLFM4Q6UX06 510 aa12.27□□□□□ -0.44
USP54-204ENST00000422491 SUGCTQ9HAC7 445 aa12.27□□□□□ -0.44
USP54-204ENST00000422491 DDX21Q9NR30 783 aaKnown RBP eCLIP12.27□□□□□ -0.44
USP54-204ENST00000422491 HPS5Q9UPZ3 1129 aa12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms