RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 PPP1R13BQ96KQ4 1090 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 TCEANC2Q96MN5 208 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 MYD88Q99836 296 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 MTA3Q9BTC8 594 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 PLA2G12BQ9BX93 195 aa6.66□□□□□ -1.34
CCDC88A-203ENST00000412148 PRAMEF22A3QJZ6 481 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 GTPBP6O43824 516 aaPredicted RBP6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 ABCB7O75027 752 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 ZRANB2O95218 330 aaKnown RBP eCLIP6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 SLC20A2Q08357 652 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 SLC39A14Q15043 492 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 MYSM1Q5VVJ2 828 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 ARMCX5Q6P1M9 558 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 FILIP1Q7Z7B0 1213 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 CCDC191Q8NCU4 936 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 SPOCK2Q92563 424 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 A0A1B0GUL6 1792 aa6.65□□□□□ -1.34
CCDC88A-203ENST00000412148 EFCAB8A8MWE9 144 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 SPTLC2O15270 562 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 SFPQP23246 707 aaKnown RBP eCLIP6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 ME1P48163 572 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 TRIM28Q13263 835 aaKnown RBP6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 FBXO38Q6PIJ6 1188 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 AOPEPQ8N6M6 819 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 ZC3H15Q8WU90 426 aaKnown RBP6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 HSD3B7Q9H2F3 369 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 PRDM10Q9NQV6 1147 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 DNAI1Q9UI46 699 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.65□□□□□ -1.352e-6■□□□□ 9.5
CCDC88A-203ENST00000412148 USP16Q9Y5T5 823 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 KIAA1551Q9HCM1 1747 aa6.65□□□□□ -1.35
CCDC88A-203ENST00000412148 WDR17Q8IZU2 1322 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 EYA2O00167 538 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 SLC3A2P08195 630 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 CEBPAP49715 358 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 RCAN1P53805 252 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 APOBRQ0VD83 1088 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 NT5DC1Q5TFE4 455 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 ANO1Q5XXA6 986 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 JMYQ8N9B5 988 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 DDX54Q8TDD1 881 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 ZNF496Q96IT1 587 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 MPHOSPH8Q99549 860 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 SIL1Q9H173 461 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 HPS5Q9UPZ3 1129 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 CHMP3Q9Y3E7 222 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 NUP98P52948 1817 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 ITGB4P16144 1822 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 BCL9LQ86UU0 1499 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 FOXP2O15409 715 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 CDKL5O76039 1030 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 ZNF202O95125 648 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 TATP17735 454 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 NDUFA8P51970 172 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 TBX2Q13207 712 aaPredicted RBP6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 TUBB2AQ13885 445 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 IMMTQ16891 758 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 DPCR1Q3MIW9 517 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 CCDC158Q5M9N0 1113 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 TRIM65Q6PJ69 517 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 CCDC82Q8N4S0 544 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 TRIML1Q8N9V2 468 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 RAPGEF4Q8WZA2 1011 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 SEC62Q99442 399 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 TUBB2BQ9BVA1 445 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 XPO4Q9C0E2 1151 aaKnown RBP6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 AKAP2Q9Y2D5 859 aa6.64□□□□□ -1.35
CCDC88A-203ENST00000412148 A0A087WZG4 1122 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 FAM177BA6PVY3 158 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 KIF23Q02241 960 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 STK38Q15208 465 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 UBE3BQ7Z3V4 1068 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 KLHDC4Q8TBB5 520 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 APPBP2Q92624 585 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 EDC3Q96F86 508 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 DDX11Q96FC9 970 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 C8orf76Q96K31 380 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 SDF4Q9BRK5 362 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 RNF39Q9H2S5 420 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ARGLU1Q9NWB6 273 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ZNF446Q9NWS9 450 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 FHOD1Q9Y613 1164 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 WNK3Q9BYP7 1800 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ARHGAP6O43182 974 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ZSCAN12O43309 604 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 FGD1P98174 961 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 MYL5Q02045 173 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ARID5BQ14865 1188 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 PTPAQ15257 358 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ALX1Q15699 326 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ESCO1Q5FWF5 840 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 JAKMIP3Q5VZ66 844 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 RESP18Q5W5W9 173 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 CCDC129Q6ZRS4 1044 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 SGMS1Q86VZ5 419 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 VSTM4Q8IW00 320 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 ZNF579Q8NAF0 562 aaKnown RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 NCOA7Q8NI08 942 aa6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 CWC25Q9NXE8 425 aaPredicted RBP6.63□□□□□ -1.35
CCDC88A-203ENST00000412148 IQSEC3Q9UPP2 1182 aaPredicted RBP6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 46 ms