RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 SALL1Q9NSC2 1324 aa16.77■□□□□ 0.27
GPNMB-203ENST00000409458 FGAP02671 866 aa16.76■□□□□ 0.27
GPNMB-203ENST00000409458 HSP90AA1P07900 732 aaKnown RBP16.76■□□□□ 0.27
GPNMB-203ENST00000409458 IL1R1P14778 569 aa16.76■□□□□ 0.27
GPNMB-203ENST00000409458 PRDX5P30044 214 aa16.76■□□□□ 0.27
GPNMB-203ENST00000409458 DDIT3P35638 169 aa16.76■□□□□ 0.27
GPNMB-203ENST00000409458 BLOC1S2Q6QNY1 142 aa16.76■□□□□ 0.27
GPNMB-203ENST00000409458 NSUN4Q96CB9 384 aaKnown RBP16.76■□□□□ 0.27
GPNMB-203ENST00000409458 PDRG1Q9NUG6 133 aa16.76■□□□□ 0.27
GPNMB-203ENST00000409458 RPS6KB1P23443 525 aa16.75■□□□□ 0.27
GPNMB-203ENST00000409458 MECOMQ03112 1051 aa16.75■□□□□ 0.27
GPNMB-203ENST00000409458 NAA16Q6N069 864 aaPredicted RBP16.75■□□□□ 0.27
GPNMB-203ENST00000409458 DPP8Q6V1X1 898 aaPredicted RBP16.75■□□□□ 0.27
GPNMB-203ENST00000409458 CTNNA3Q9UI47 895 aa16.75■□□□□ 0.27
GPNMB-203ENST00000409458 ZBTB7AO95365 584 aa16.75■□□□□ 0.27
GPNMB-203ENST00000409458 HAND2P61296 217 aa16.75■□□□□ 0.27
GPNMB-203ENST00000409458 WDR66Q8TBY9 1149 aa16.75■□□□□ 0.27
GPNMB-203ENST00000409458 CNKSR1Q969H4 720 aa16.75■□□□□ 0.27
GPNMB-203ENST00000409458 TCEANC2Q96MN5 208 aa16.75■□□□□ 0.27
GPNMB-203ENST00000409458 NEK1Q96PY6 1258 aa16.75■□□□□ 0.27
GPNMB-203ENST00000409458 EPB41L4AQ9HCS5 686 aaPredicted RBP16.75■□□□□ 0.27
GPNMB-203ENST00000409458 CHD4Q14839 1912 aa16.74■□□□□ 0.27
GPNMB-203ENST00000409458 IMMTQ16891 758 aaKnown RBP16.74■□□□□ 0.27
GPNMB-203ENST00000409458 LARP6Q9BRS8 491 aaKnown RBP16.74■□□□□ 0.27
GPNMB-203ENST00000409458 TMX4Q9H1E5 349 aaPredicted RBP16.74■□□□□ 0.27
GPNMB-203ENST00000409458 SNED1Q8TER0 1413 aa16.73■□□□□ 0.27
GPNMB-203ENST00000409458 TIAM2Q8IVF5 1701 aa16.73■□□□□ 0.27
GPNMB-203ENST00000409458 MAGEB6P1A0A0J9YX57 407 aa16.73■□□□□ 0.27
GPNMB-203ENST00000409458 PATL2C9JE40 543 aaKnown RBP16.73■□□□□ 0.27
GPNMB-203ENST00000409458 E7EWF7 191 aa16.73■□□□□ 0.27
GPNMB-203ENST00000409458 RIMBP2O15034 1052 aa16.73■□□□□ 0.27
GPNMB-203ENST00000409458 PRKAB2O43741 272 aa16.73■□□□□ 0.27
GPNMB-203ENST00000409458 APPP05067 770 aa16.73■□□□□ 0.27
GPNMB-203ENST00000409458 ZGPATQ8N5A5 531 aaKnown RBP16.73■□□□□ 0.27
GPNMB-203ENST00000409458 UPF1Q92900 1129 aaKnown RBP eCLIP16.73■□□□□ 0.27
GPNMB-203ENST00000409458 RIOK1Q9BRS2 568 aaKnown RBP16.73■□□□□ 0.27
GPNMB-203ENST00000409458 ZMYM6O95789 1325 aa16.73■□□□□ 0.27
GPNMB-203ENST00000409458 GSG1L2A8MUP6 293 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 GNAT2P19087 354 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 CUL4AQ13619 759 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 GRIK5Q16478 980 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 SPTY2D1Q68D10 685 aaPredicted RBP16.72■□□□□ 0.27
GPNMB-203ENST00000409458 DZIP1Q86YF9 867 aaKnown RBP16.72■□□□□ 0.27
GPNMB-203ENST00000409458 NBPF3Q9H094 633 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 ZNF219Q9P2Y4 722 aaPredicted RBP16.72■□□□□ 0.27
GPNMB-203ENST00000409458 SLC4A4Q9Y6R1 1079 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 DYNLL1P63167 89 aaKnown RBP16.72■□□□□ 0.27
GPNMB-203ENST00000409458 ALX1Q15699 326 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 IFNL3Q8IZI9 196 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 C7orf43Q8WVR3 580 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 COA1Q9GZY4 146 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 CHMP5Q9NZZ3 219 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 LIMCH1Q9UPQ0 1083 aa16.72■□□□□ 0.27
GPNMB-203ENST00000409458 ZNF213O14771 459 aa16.71■□□□□ 0.27
GPNMB-203ENST00000409458 LARGE1O95461 756 aa16.71■□□□□ 0.27
GPNMB-203ENST00000409458 LDHBP07195 334 aaKnown RBP16.71■□□□□ 0.27
GPNMB-203ENST00000409458 TOB2Q14106 344 aaPredicted RBP16.71■□□□□ 0.27
GPNMB-203ENST00000409458 R3HDM1Q15032 1099 aaKnown RBP16.71■□□□□ 0.27
GPNMB-203ENST00000409458 ZC3H12CQ9C0D7 883 aaKnown RBP16.71■□□□□ 0.27
GPNMB-203ENST00000409458 ALDH8A1Q9H2A2 487 aaPredicted RBP16.71■□□□□ 0.27
GPNMB-203ENST00000409458 TBC1D10CQ8IV04 446 aa16.7■□□□□ 0.26
GPNMB-203ENST00000409458 EYA3Q99504 573 aa16.7■□□□□ 0.26
GPNMB-203ENST00000409458 MTFR1LQ9H019 292 aa16.7■□□□□ 0.26
GPNMB-203ENST00000409458 NAPBQ9H115 298 aa16.7■□□□□ 0.26
GPNMB-203ENST00000409458 ATF5Q9Y2D1 282 aaPredicted RBP16.7■□□□□ 0.26
GPNMB-203ENST00000409458 HMGB1P09429 215 aaKnown RBP16.69■□□□□ 0.26
GPNMB-203ENST00000409458 DPEP1P16444 411 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 TMED8Q6PL24 325 aaPredicted RBP16.69■□□□□ 0.26
GPNMB-203ENST00000409458 FAM205AQ6ZU69 1335 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 SDR42E1Q8WUS8 393 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 AATFQ9NY61 560 aaKnown RBP eCLIP16.69■□□□□ 0.26
GPNMB-203ENST00000409458 MYH2Q9UKX2 1941 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 TPCN1Q9ULQ1 816 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 IGSF3O75054 1194 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 KCNA3P22001 575 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 EXOSC10Q01780 885 aaKnown RBP16.69■□□□□ 0.26
GPNMB-203ENST00000409458 DOK7Q18PE1 504 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 MFSD14BQ5SR56 506 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 DHX32Q7L7V1 743 aaKnown RBP16.69■□□□□ 0.26
GPNMB-203ENST00000409458 RTFDC1Q9BY42 306 aaPredicted RBP16.69■□□□□ 0.26
GPNMB-203ENST00000409458 LRRC2Q9BYS8 371 aa16.69■□□□□ 0.26
GPNMB-203ENST00000409458 CIZ1Q9ULV3 898 aaPredicted RBP16.69■□□□□ 0.26
GPNMB-203ENST00000409458 BAZ2AQ9UIF9 1905 aaKnown RBP16.68■□□□□ 0.26
GPNMB-203ENST00000409458 ZNF646O15015 1829 aaPredicted RBP16.68■□□□□ 0.26
GPNMB-203ENST00000409458 LAMB1P07942 1786 aa16.68■□□□□ 0.26
GPNMB-203ENST00000409458 TDO2P48775 406 aa16.68■□□□□ 0.26
GPNMB-203ENST00000409458 GTF2IP78347 998 aa16.68■□□□□ 0.26
GPNMB-203ENST00000409458 ANKRD1Q15327 319 aa16.68■□□□□ 0.26
GPNMB-203ENST00000409458 DIXDC1Q155Q3 683 aa16.68■□□□□ 0.26
GPNMB-203ENST00000409458 Q6ZUG5 572 aa16.68■□□□□ 0.26
GPNMB-203ENST00000409458 NACAP1Q9BZK3 213 aa16.68■□□□□ 0.26
GPNMB-203ENST00000409458 C21orf2O43822 256 aa16.67■□□□□ 0.26
GPNMB-203ENST00000409458 POLD1P28340 1107 aa16.67■□□□□ 0.26
GPNMB-203ENST00000409458 ST3GAL1Q11201 340 aa16.67■□□□□ 0.26
GPNMB-203ENST00000409458 ME3Q16798 604 aa16.67■□□□□ 0.26
GPNMB-203ENST00000409458 MB21D2Q8IYB1 491 aaPredicted RBP16.67■□□□□ 0.26
GPNMB-203ENST00000409458 TTLL6Q8N841 843 aa16.67■□□□□ 0.26
GPNMB-203ENST00000409458 TBC1D22AQ8WUA7 517 aa16.67■□□□□ 0.26
GPNMB-203ENST00000409458 INTS4Q96HW7 963 aaKnown RBP16.67■□□□□ 0.26
GPNMB-203ENST00000409458 ZSCAN31Q96LW9 406 aaPredicted RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms