RNA–Protein interactions for RNA: ENST00000397906.6

TTC28-201, Transcript of tetratricopeptide repeat domain 28, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene TTC28, Length 11,795 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28-201ENST00000397906 PSMA7O14818 248 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 TSPOAP1O95153 1857 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 PAIP2Q9BPZ3 127 aaKnown RBP12.86□□□□□ -0.35
TTC28-201ENST00000397906 PLCB3Q01970 1234 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 CEP85Q6P2H3 762 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 XAGE2Q96GT9 111 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 ZNF174Q15697 407 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 DTHD1Q6ZMT9 781 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 FERP16591 822 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 CREB3L3Q68CJ9 461 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 IFI16Q16666 785 aaKnown RBP12.86□□□□□ -0.35
TTC28-201ENST00000397906 AOPEPQ8N6M6 819 aa12.86□□□□□ -0.35
TTC28-201ENST00000397906 RFX1P22670 979 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 MRPS27Q92552 414 aaKnown RBP12.85□□□□□ -0.35
TTC28-201ENST00000397906 PAGR1Q9BTK6 254 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 ESPNB1AK53 854 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 RAPGEF1Q13905 1077 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 PDE8AO60658 829 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 MCM3P25205 808 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 G2E3Q7L622 706 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 PDCL2Q8N4E4 241 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 TTC41PQ6P2S7 1318 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 MAP3K1Q13233 1512 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 A0A1W2PRG0 241 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 UBXN1Q04323 297 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 BIRC3Q13489 604 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 MAPKAPK5Q8IW41 473 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 CCT6AP40227 531 aaKnown RBP12.85□□□□□ -0.35
TTC28-201ENST00000397906 GSDMDP57764 484 aa12.85□□□□□ -0.35
TTC28-201ENST00000397906 KIF2AO00139 706 aaPredicted RBP12.84□□□□□ -0.35
TTC28-201ENST00000397906 CTDSPL2Q05D32 466 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 SNW1Q13573 536 aaKnown RBP12.84□□□□□ -0.35
TTC28-201ENST00000397906 TGFBRAP1Q8WUH2 860 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 METTL22Q9BUU2 404 aaPredicted RBP12.84□□□□□ -0.35
TTC28-201ENST00000397906 RBM28Q9NW13 759 aaKnown RBP12.84□□□□□ -0.35
TTC28-201ENST00000397906 HS2ST1Q7LGA3 356 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 USP48Q86UV5 1035 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 KIFC2Q96AC6 838 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.84□□□□□ -0.35
TTC28-201ENST00000397906 ADAMTS12P58397 1594 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 SPTLC2O15270 562 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 POLR3GO15318 223 aaPredicted RBP12.84□□□□□ -0.35
TTC28-201ENST00000397906 HDAC1Q13547 482 aaPredicted RBP12.84□□□□□ -0.35
TTC28-201ENST00000397906 CEP135Q66GS9 1140 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 RNF34Q969K3 372 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 TTC12Q9H892 705 aaPredicted RBP12.84□□□□□ -0.35
TTC28-201ENST00000397906 ALDH1B1P30837 517 aa12.84□□□□□ -0.35
TTC28-201ENST00000397906 BRDTQ58F21 947 aaPredicted RBP12.84□□□□□ -0.35
TTC28-201ENST00000397906 SOS1Q07889 1333 aaPredicted RBP12.84□□□□□ -0.35
TTC28-201ENST00000397906 AK2P54819 239 aa12.83□□□□□ -0.35
TTC28-201ENST00000397906 CTAGE1Q96RT6 745 aa12.83□□□□□ -0.35
TTC28-201ENST00000397906 KRT9P35527 623 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 CTR9Q6PD62 1173 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 DNAJC10Q8IXB1 793 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 DPY19L2Q6NUT2 758 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 ZSCAN30Q86W11 494 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 GNG11P61952 73 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 IRX3P78415 501 aaPredicted RBP12.83□□□□□ -0.36
TTC28-201ENST00000397906 ZFYVE9O95405 1425 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 FAM182BQ5T319 152 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 MAST3O60307 1309 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 RNF187Q5TA31 235 aaPredicted RBP12.83□□□□□ -0.36
TTC28-201ENST00000397906 PIK3AP1Q6ZUJ8 805 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 PLVAPQ9BX97 442 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 DOK7Q18PE1 504 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 CCDC117Q8IWD4 279 aaPredicted RBP12.83□□□□□ -0.36
TTC28-201ENST00000397906 CCDC63Q8NA47 563 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 MYL10Q9BUA6 226 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 FAM170AA1A519 330 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 FNBP1Q96RU3 617 aa12.83□□□□□ -0.36
TTC28-201ENST00000397906 ZSCAN23Q3MJ62 389 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 RUFY3Q7L099 469 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 DDX21Q9NR30 783 aaKnown RBP eCLIP12.82□□□□□ -0.36
TTC28-201ENST00000397906 NSMFQ6X4W1 530 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 ATP10AO60312 1499 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 DLGAP5Q15398 846 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 CEP83Q9Y592 693 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 CNGA1P29973 690 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 QTRT2Q9H974 415 aaKnown RBP12.82□□□□□ -0.36
TTC28-201ENST00000397906 FRMD4BQ9Y2L6 1034 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 CEP63Q96MT8 703 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 PTPRKQ15262 1439 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 EYA2O00167 538 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 TNNI3KQ59H18 835 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 FAM107BQ9H098 131 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 FPGT-TNNI3KV9GXZ4 949 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 CPA1P15085 419 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 FAM47CQ5HY64 1035 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.82□□□□□ -0.36
TTC28-201ENST00000397906 IQCGQ9H095 443 aaKnown RBP12.82□□□□□ -0.36
TTC28-201ENST00000397906 PBRM1Q86U86 1689 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 RAD51AP2Q09MP3 1159 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 DNAJC25Q9H1X3 360 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 DACT1Q9NYF0 836 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 TCP10L2B9ZVM9 353 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 SUPT20HQ8NEM7 779 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 H7C1D1 291 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 NCAPH2Q6IBW4 605 aa12.82□□□□□ -0.36
TTC28-201ENST00000397906 GTF2IP78347 998 aa12.81□□□□□ -0.36
TTC28-201ENST00000397906 SBNO1A3KN83 1393 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms