RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 IRX5P78411 483 aaPredicted RBP13.29□□□□□ -0.28
SYNPO-202ENST00000394243 HEATR3Q7Z4Q2 680 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 BRAPQ7Z569 592 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 CLSTN2Q9H4D0 955 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 ZRANB1Q9UGI0 708 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 SLC8A1P32418 973 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 BRD3Q15059 726 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 PI4KAP2A4QPH2 592 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 PAK2Q13177 524 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 RAPGEF1Q13905 1077 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 CLUL1Q15846 466 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 PI4KAP1Q8N8J0 262 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 TBC1D31Q96DN5 1066 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 TSPYL2Q9H2G4 693 aaPredicted RBP13.29□□□□□ -0.28
SYNPO-202ENST00000394243 OPHN1O60890 802 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 COG7P83436 770 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 FAM169AQ9Y6X4 670 aa13.29□□□□□ -0.28
SYNPO-202ENST00000394243 ARHGAP6O43182 974 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 TRIM14Q14142 442 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 KLHL7Q8IXQ5 586 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 TMTC2Q8N394 836 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 PLIN2Q99541 437 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 LMBRD1Q9NUN5 540 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 TNNQ9UQP3 1299 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 FAM83GA6ND36 823 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 HIP1RO75146 1068 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 USHBP1Q8N6Y0 703 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 BCAS4Q8TDM0 211 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 ARHGAP45Q92619 1136 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 TMOD2Q9NZR1 351 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 PFDN1O60925 122 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 SNCBQ16143 134 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 SECISBP2LQ93073 1101 aaKnown RBP13.28□□□□□ -0.28
SYNPO-202ENST00000394243 VEZTQ9HBM0 779 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 TBC1D8BQ0IIM8 1120 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 MGARPQ8TDB4 240 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 NOC4LQ9BVI4 516 aaKnown RBP13.28□□□□□ -0.28
SYNPO-202ENST00000394243 RRP15Q9Y3B9 282 aaKnown RBP13.28□□□□□ -0.28
SYNPO-202ENST00000394243 INF2Q27J81 1249 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 LEO1Q8WVC0 666 aaPredicted RBP13.28□□□□□ -0.28
SYNPO-202ENST00000394243 JARID2Q92833 1246 aaPredicted RBP13.28□□□□□ -0.28
SYNPO-202ENST00000394243 ANKIB1Q9P2G1 1089 aa13.28□□□□□ -0.28
SYNPO-202ENST00000394243 USP37Q86T82 979 aa13.27□□□□□ -0.28
SYNPO-202ENST00000394243 RAB3IPQ96QF0 476 aaPredicted RBP13.27□□□□□ -0.28
SYNPO-202ENST00000394243 ZNF215Q9UL58 517 aaPredicted RBP13.27□□□□□ -0.28
SYNPO-202ENST00000394243 EMILIN1Q9Y6C2 1016 aa13.27□□□□□ -0.28
SYNPO-202ENST00000394243 ATP1A2P50993 1020 aa13.27□□□□□ -0.28
SYNPO-202ENST00000394243 ODF2LQ9ULJ1 636 aa13.27□□□□□ -0.28
SYNPO-202ENST00000394243 USH1CQ9Y6N9 552 aa13.27□□□□□ -0.28
SYNPO-202ENST00000394243 IL16Q14005 1332 aa13.27□□□□□ -0.28
SYNPO-202ENST00000394243 EHBP1L1Q8N3D4 1523 aa13.27□□□□□ -0.28
SYNPO-202ENST00000394243 SMIM24O75264 130 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 PPFIA4O75335 1185 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 KRT2P35908 639 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 MTX1Q13505 466 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 MPRIPQ6WCQ1 1025 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 CAPS2Q9BXY5 557 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 NCAPD3P42695 1498 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 CLTAP09496 248 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 SMARCC2Q8TAQ2 1214 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 STAG1Q8WVM7 1258 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 STX8Q9UNK0 236 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 PPM1FP49593 454 aaPredicted RBP13.27□□□□□ -0.29
SYNPO-202ENST00000394243 HHATQ5VTY9 493 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 CPA1P15085 419 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 ATL3Q6DD88 541 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 UBE3BQ7Z3V4 1068 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 PLEKHM2Q8IWE5 1019 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 WHAMMQ8TF30 809 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 NOX5Q96PH1 765 aa13.27□□□□□ -0.29
SYNPO-202ENST00000394243 TRMT112Q9UI30 125 aaKnown RBP13.27□□□□□ -0.29
SYNPO-202ENST00000394243 RASSF2P50749 326 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 KRT71Q3SY84 523 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 PLEKHA4Q9H4M7 779 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 PLCB1Q9NQ66 1216 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 PIK3R4Q99570 1358 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 LDHAL6AQ6ZMR3 332 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 IQUBQ8NA54 791 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 NUDT16Q96DE0 195 aaKnown RBP13.26□□□□□ -0.29
SYNPO-202ENST00000394243 SBNO2Q9Y2G9 1366 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 ATP5J2-PTCD1G3V325 749 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 MRPS9P82933 396 aaKnown RBP13.26□□□□□ -0.29
SYNPO-202ENST00000394243 RASIP1Q5U651 963 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 CNNM2Q9H8M5 875 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 TMEM63CQ9P1W3 806 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 DCAF17Q5H9S7 520 aaPredicted RBP13.26□□□□□ -0.29
SYNPO-202ENST00000394243 MIER3Q7Z3K6 550 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 TIAM1Q13009 1591 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 LRRD1A4D1F6 860 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 ZNF354CQ86Y25 554 aa13.26□□□□□ -0.29
SYNPO-202ENST00000394243 CCT5P48643 541 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 SUPT6HQ7KZ85 1726 aaKnown RBP13.25□□□□□ -0.29
SYNPO-202ENST00000394243 SESN3P58005 492 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 GAPVD1Q14C86 1478 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 SPATS2Q86XZ4 545 aaKnown RBP13.25□□□□□ -0.29
SYNPO-202ENST00000394243 TMTC1Q8IUR5 882 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 MORC4Q8TE76 937 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 ESR2Q92731 530 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 SPOPO43791 374 aa13.25□□□□□ -0.29
SYNPO-202ENST00000394243 FAM13AO94988 1023 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms