RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 IL25Q9H293 177 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 ANO2Q9NQ90 1003 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 ZBTB12Q9Y330 459 aaPredicted RBP17.07■□□□□ 0.32
HMGA1-203ENST00000374116 ARAP2Q8WZ64 1704 aa17.07■□□□□ 0.32
HMGA1-203ENST00000374116 PSMD14O00487 310 aa17.06■□□□□ 0.32
HMGA1-203ENST00000374116 NUCB2P80303 420 aa17.06■□□□□ 0.32
HMGA1-203ENST00000374116 SCARF1Q14162 830 aa17.06■□□□□ 0.32
HMGA1-203ENST00000374116 GPR108Q9NPR9 543 aa17.06■□□□□ 0.32
HMGA1-203ENST00000374116 EIF6P56537 245 aaKnown RBP17.05■□□□□ 0.32
HMGA1-203ENST00000374116 PODNQ7Z5L7 613 aa17.05■□□□□ 0.32
HMGA1-203ENST00000374116 SNRKQ9NRH2 765 aa17.05■□□□□ 0.32
HMGA1-203ENST00000374116 COL1A1P02452 1464 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-203ENST00000374116 SGSM2O43147 1006 aa17.05■□□□□ 0.32
HMGA1-203ENST00000374116 IL1R1P14778 569 aa17.05■□□□□ 0.32
HMGA1-203ENST00000374116 SKOR2Q2VWA4 1001 aaPredicted RBP17.05■□□□□ 0.32
HMGA1-203ENST00000374116 TTLL5Q6EMB2 1281 aa17.05■□□□□ 0.32
HMGA1-203ENST00000374116 TDRD7Q8NHU6 1098 aaKnown RBP17.05■□□□□ 0.32
HMGA1-203ENST00000374116 GPATCH3Q96I76 525 aa17.05■□□□□ 0.32
HMGA1-203ENST00000374116 PRDM4Q9UKN5 801 aa17.05■□□□□ 0.32
HMGA1-203ENST00000374116 SHTN1A0MZ66 631 aa17.04■□□□□ 0.32
HMGA1-203ENST00000374116 RASGRF1Q13972 1273 aa17.04■□□□□ 0.32
HMGA1-203ENST00000374116 TTC39AQ5SRH9 613 aa17.04■□□□□ 0.32
HMGA1-203ENST00000374116 MYH13Q9UKX3 1938 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 MAP4K4O95819 1239 aaPredicted RBP17.03■□□□□ 0.32
HMGA1-203ENST00000374116 MCAMP43121 646 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 NEK4P51957 841 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 CIAPIN1Q6FI81 312 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 TRIM44Q96DX7 344 aaPredicted RBP17.03■□□□□ 0.32
HMGA1-203ENST00000374116 USP17L3A6NCW0 530 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 USP17L4A6NCW7 530 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 GOLGA6L22H0YM25 854 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 CCDC158Q5M9N0 1113 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 USP17L1Q7RTZ2 530 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 PPP1R9BQ96SB3 815 aa17.03■□□□□ 0.32
HMGA1-203ENST00000374116 F8W031 263 aaPredicted RBP17.02■□□□□ 0.31
HMGA1-203ENST00000374116 GRIK5Q16478 980 aa17.02■□□□□ 0.31
HMGA1-203ENST00000374116 CERS5Q8N5B7 392 aa17.02■□□□□ 0.31
HMGA1-203ENST00000374116 OFD1O75665 1012 aa17.01■□□□□ 0.31
HMGA1-203ENST00000374116 CYP2E1P05181 493 aaPredicted RBP17.01■□□□□ 0.31
HMGA1-203ENST00000374116 HSPA4P34932 840 aa17.01■□□□□ 0.31
HMGA1-203ENST00000374116 DPY19L2Q6NUT2 758 aa17.01■□□□□ 0.31
HMGA1-203ENST00000374116 EVI5LQ96CN4 794 aa17.01■□□□□ 0.31
HMGA1-203ENST00000374116 HMG20BQ9P0W2 317 aa17.01■□□□□ 0.31
HMGA1-203ENST00000374116 PALD1Q9ULE6 856 aa17.01■□□□□ 0.31
HMGA1-203ENST00000374116 ZNF646O15015 1829 aaPredicted RBP17.01■□□□□ 0.31
HMGA1-203ENST00000374116 GLTPD2A6NH11 291 aa17■□□□□ 0.31
HMGA1-203ENST00000374116 CCDC173Q0VFZ6 552 aa17■□□□□ 0.31
HMGA1-203ENST00000374116 DACT2Q5SW24 774 aa17■□□□□ 0.31
HMGA1-203ENST00000374116 EDC3Q96F86 508 aaKnown RBP17■□□□□ 0.31
HMGA1-203ENST00000374116 LSG1Q9H089 658 aaKnown RBP17■□□□□ 0.31
HMGA1-203ENST00000374116 BOLA2Q9H3K6 86 aa17■□□□□ 0.31
HMGA1-203ENST00000374116 GNL3LQ9NVN8 582 aaKnown RBP17■□□□□ 0.31
HMGA1-203ENST00000374116 ARID4AP29374 1257 aaPredicted RBP17■□□□□ 0.31
HMGA1-203ENST00000374116 GMPSP49915 693 aaPredicted RBP17■□□□□ 0.31
HMGA1-203ENST00000374116 TNIP1Q15025 636 aa17■□□□□ 0.31
HMGA1-203ENST00000374116 MFSD14BQ5SR56 506 aa17■□□□□ 0.31
HMGA1-203ENST00000374116 STRIP1Q5VSL9 837 aa17■□□□□ 0.31
HMGA1-203ENST00000374116 PDZRN4Q6ZMN7 1036 aaPredicted RBP17■□□□□ 0.31
HMGA1-203ENST00000374116 KIAA0825Q8IV33 1275 aa17■□□□□ 0.31
HMGA1-203ENST00000374116 RUFY2Q8WXA3 655 aa17■□□□□ 0.31
HMGA1-203ENST00000374116 RAD50Q92878 1312 aa16.99■□□□□ 0.31
HMGA1-203ENST00000374116 AKAP11Q9UKA4 1901 aa16.99■□□□□ 0.31
HMGA1-203ENST00000374116 BAG4O95429 457 aaKnown RBP16.99■□□□□ 0.31
HMGA1-203ENST00000374116 VIL1P09327 827 aaKnown RBP16.99■□□□□ 0.31
HMGA1-203ENST00000374116 ZAP70P43403 619 aa16.99■□□□□ 0.31
HMGA1-203ENST00000374116 GPC2Q8N158 579 aa16.99■□□□□ 0.31
HMGA1-203ENST00000374116 SPATA5Q8NB90 893 aa16.99■□□□□ 0.31
HMGA1-203ENST00000374116 GZF1Q9H116 711 aaPredicted RBP16.99■□□□□ 0.31
HMGA1-203ENST00000374116 PSME4Q14997 1843 aa16.99■□□□□ 0.31
HMGA1-203ENST00000374116 RSBN1LQ6PCB5 846 aaPredicted RBP16.98■□□□□ 0.31
HMGA1-203ENST00000374116 KIAA1211Q6ZU35 1233 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 TMX3Q96JJ7 454 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 DNAJC2Q99543 621 aaKnown RBP16.98■□□□□ 0.31
HMGA1-203ENST00000374116 ABCF2Q9UG63 623 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 MYO5AQ9Y4I1 1855 aaKnown RBP16.98■□□□□ 0.31
HMGA1-203ENST00000374116 PRDX5P30044 214 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 EPS15P42566 896 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 SCNN1DP51172 638 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 CUL4AQ13619 759 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 ZSCAN30Q86W11 494 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 NMRK2Q9NPI5 230 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 DENND2AQ9ULE3 1009 aa16.98■□□□□ 0.31
HMGA1-203ENST00000374116 POTECB2RU33 542 aa16.97■□□□□ 0.31
HMGA1-203ENST00000374116 UQCRFS1P1P0C7P4 283 aa16.97■□□□□ 0.31
HMGA1-203ENST00000374116 ATP5JP18859 108 aa16.97■□□□□ 0.31
HMGA1-203ENST00000374116 HS1BP3Q53T59 392 aa16.97■□□□□ 0.31
HMGA1-203ENST00000374116 ZGPATQ8N5A5 531 aaKnown RBP16.97■□□□□ 0.31
HMGA1-203ENST00000374116 INTS4Q96HW7 963 aaKnown RBP16.97■□□□□ 0.31
HMGA1-203ENST00000374116 RRAGCQ9HB90 399 aa16.97■□□□□ 0.31
HMGA1-203ENST00000374116 DIAPH3Q9NSV4 1193 aa16.97■□□□□ 0.31
HMGA1-203ENST00000374116 PCDHAC2Q9Y5I4 1007 aa16.97■□□□□ 0.31
HMGA1-203ENST00000374116 FAM205AQ6ZU69 1335 aa16.97■□□□□ 0.31
HMGA1-203ENST00000374116 EGFRP00533 1210 aa16.96■□□□□ 0.31
HMGA1-203ENST00000374116 RBM26Q5T8P6 1007 aaKnown RBP16.96■□□□□ 0.31
HMGA1-203ENST00000374116 CWC27Q6UX04 472 aaKnown RBP16.96■□□□□ 0.31
HMGA1-203ENST00000374116 MTERF4Q7Z6M4 381 aaKnown RBP16.96■□□□□ 0.31
HMGA1-203ENST00000374116 ZNF784Q8NCA9 323 aaPredicted RBP16.96■□□□□ 0.31
HMGA1-203ENST00000374116 ZC3H4Q9UPT8 1303 aaKnown RBP16.96■□□□□ 0.31
HMGA1-203ENST00000374116 SAMD7Q7Z3H4 446 aa16.96■□□□□ 0.3
HMGA1-203ENST00000374116 MICALL2Q8IY33 904 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 384.5 ms