RNA–Protein interactions for RNA: ENST00000368545.7

TPM3-213, Transcript of tropomyosin 3, humanhuman

TSL 1 (best)

Gene TPM3, Length 2,147 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-213ENST00000368545 PDXDC2PQ6P474 469 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 SIX5Q8N196 739 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 NOD1Q9Y239 953 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 HEG1Q9ULI3 1381 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 LAMB4A4D0S4 1761 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 TOGARAM1Q9Y4F4 1720 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 UBR2Q8IWV8 1755 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 TCERG1O14776 1098 aaKnown RBP10.94□□□□□ -0.66
TPM3-213ENST00000368545 DDX54Q8TDD1 881 aaKnown RBP10.94□□□□□ -0.66
TPM3-213ENST00000368545 ZNF592Q92610 1267 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 SLC4A5Q9BY07 1137 aa10.94□□□□□ -0.66
TPM3-213ENST00000368545 SBF1O95248 1867 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 LGR5O75473 907 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 MMP10P09238 476 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 DPEP1P16444 411 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 DMRTA1Q5VZB9 504 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 LDHDQ86WU2 507 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 PASKQ96RG2 1323 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 ERVV-2B6SEH9 535 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 JUNDP17535 347 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 MCCD1P59942 119 aaPredicted RBP10.93□□□□□ -0.66
TPM3-213ENST00000368545 ZNF790Q6PG37 636 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 POTEEQ6S8J3 1075 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 ASB16Q96NS5 453 aa10.93□□□□□ -0.66
TPM3-213ENST00000368545 INTS3Q68E01 1043 aaKnown RBP10.92□□□□□ -0.66
TPM3-213ENST00000368545 ADAM32Q8TC27 787 aa10.92□□□□□ -0.66
TPM3-213ENST00000368545 ZBTB40Q9NUA8 1239 aa10.92□□□□□ -0.66
TPM3-213ENST00000368545 SEC13P55735 322 aa10.91□□□□□ -0.66
TPM3-213ENST00000368545 CABP4P57796 275 aa10.91□□□□□ -0.66
TPM3-213ENST00000368545 RC3H1Q5TC82 1133 aaKnown RBP10.91□□□□□ -0.66
TPM3-213ENST00000368545 CCDC85AQ96PX6 553 aaPredicted RBP10.91□□□□□ -0.66
TPM3-213ENST00000368545 RWDD1Q9H446 243 aaPredicted RBP10.91□□□□□ -0.66
TPM3-213ENST00000368545 SEPT3Q9UH03 358 aa10.91□□□□□ -0.66
TPM3-213ENST00000368545 TIAM2Q8IVF5 1701 aa10.91□□□□□ -0.66
TPM3-213ENST00000368545 SFI1A8K8P3 1242 aa10.91□□□□□ -0.66
TPM3-213ENST00000368545 KCNQ3O43525 872 aa10.91□□□□□ -0.66
TPM3-213ENST00000368545 VEGFBP49765 207 aa10.91□□□□□ -0.66
TPM3-213ENST00000368545 TTC5Q8N0Z6 440 aa10.91□□□□□ -0.66
TPM3-213ENST00000368545 A0A0G2JLW4 131 aa10.9□□□□□ -0.66
TPM3-213ENST00000368545 C21orf2O43822 256 aa10.9□□□□□ -0.66
TPM3-213ENST00000368545 MTMR3Q13615 1198 aa10.9□□□□□ -0.66
TPM3-213ENST00000368545 DEFB115Q30KQ5 88 aa10.9□□□□□ -0.66
TPM3-213ENST00000368545 GTF3C2Q8WUA4 911 aaPredicted RBP10.9□□□□□ -0.66
TPM3-213ENST00000368545 THAP11Q96EK4 314 aa10.9□□□□□ -0.66
TPM3-213ENST00000368545 DCTN4Q9UJW0 460 aa10.9□□□□□ -0.66
TPM3-213ENST00000368545 ITGB4P16144 1822 aa10.9□□□□□ -0.66
TPM3-213ENST00000368545 ARHGAP33O14559 1287 aa10.9□□□□□ -0.67
TPM3-213ENST00000368545 MAP2K2P36507 400 aa10.9□□□□□ -0.67
TPM3-213ENST00000368545 CCT4P50991 539 aaKnown RBP10.9□□□□□ -0.67
TPM3-213ENST00000368545 GTF2IP78347 998 aa10.9□□□□□ -0.67
TPM3-213ENST00000368545 TSNAXIP1Q2TAA8 658 aa10.9□□□□□ -0.67
TPM3-213ENST00000368545 CCDC102BQ68D86 513 aa10.9□□□□□ -0.67
TPM3-213ENST00000368545 LAPTM4BQ86VI4 370 aa10.9□□□□□ -0.67
TPM3-213ENST00000368545 NBPF15Q8N660 670 aa10.9□□□□□ -0.67
TPM3-213ENST00000368545 ZFRQ96KR1 1074 aaKnown RBP10.9□□□□□ -0.67
TPM3-213ENST00000368545 DBF4Q9UBU7 674 aaPredicted RBP10.9□□□□□ -0.67
TPM3-213ENST00000368545 DNMT3AQ9Y6K1 912 aaPredicted RBP10.9□□□□□ -0.67
TPM3-213ENST00000368545 ARHGAP4P98171 946 aa10.89□□□□□ -0.67
TPM3-213ENST00000368545 FKBP5Q13451 457 aaPredicted RBP10.89□□□□□ -0.67
TPM3-213ENST00000368545 HDAC1Q13547 482 aaPredicted RBP10.89□□□□□ -0.67
TPM3-213ENST00000368545 TRAPPC3LQ5T215 181 aa10.89□□□□□ -0.67
TPM3-213ENST00000368545 CAPN12Q6ZSI9 719 aa10.89□□□□□ -0.67
TPM3-213ENST00000368545 SCUBE3Q8IX30 993 aa10.89□□□□□ -0.67
TPM3-213ENST00000368545 DOLKQ9UPQ8 538 aa10.89□□□□□ -0.67
TPM3-213ENST00000368545 VPS9D1Q9Y2B5 631 aa10.89□□□□□ -0.67
TPM3-213ENST00000368545 SCN4AP35499 1836 aa10.89□□□□□ -0.67
TPM3-213ENST00000368545 IGHDP01880 384 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 EIF2S2P20042 333 aaKnown RBP10.88□□□□□ -0.67
TPM3-213ENST00000368545 OXLD1Q5BKU9 147 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 G2E3Q7L622 706 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 GPKOWQ92917 476 aaPredicted RBP eCLIP10.88□□□□□ -0.671e-12■□□□□ 9.1
TPM3-213ENST00000368545 FMNL2Q96PY5 1086 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 WDR33Q9C0J8 1336 aaKnown RBP10.88□□□□□ -0.67
TPM3-213ENST00000368545 LTBP3Q9NS15 1303 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 NAALADL2Q58DX5 795 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 TPCN2Q8NHX9 752 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 MKNK1Q9BUB5 465 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 EVA1BQ9NVM1 165 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 CHPF2Q9P2E5 772 aa10.88□□□□□ -0.67
TPM3-213ENST00000368545 SNRPA1P09661 255 aaKnown RBP10.87□□□□□ -0.67
TPM3-213ENST00000368545 CCNYL3P0C7X3 344 aa10.87□□□□□ -0.67
TPM3-213ENST00000368545 SLC39A6Q13433 755 aa10.87□□□□□ -0.67
TPM3-213ENST00000368545 ARMC2Q8NEN0 867 aa10.87□□□□□ -0.67
TPM3-213ENST00000368545 RTCBQ9Y3I0 505 aaKnown RBP10.87□□□□□ -0.67
TPM3-213ENST00000368545 FMNL1O95466 1100 aaPredicted RBP10.87□□□□□ -0.67
TPM3-213ENST00000368545 KCNA3P22001 575 aa10.87□□□□□ -0.67
TPM3-213ENST00000368545 SOGA3Q5TF21 947 aa10.87□□□□□ -0.67
TPM3-213ENST00000368545 ARHGAP9Q9BRR9 750 aa10.87□□□□□ -0.67
TPM3-213ENST00000368545 HYPKQ9NX55 129 aa10.87□□□□□ -0.67
TPM3-213ENST00000368545 POTEB2H3BUK9 544 aa10.86□□□□□ -0.67
TPM3-213ENST00000368545 ZNF496Q96IT1 587 aaPredicted RBP10.86□□□□□ -0.67
TPM3-213ENST00000368545 CNTNAP4Q9C0A0 1308 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 SLC4A10Q6U841 1118 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 ZSCAN29Q8IWY8 852 aaPredicted RBP10.85□□□□□ -0.67
TPM3-213ENST00000368545 MCOLN1Q9GZU1 580 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 DDX21Q9NR30 783 aaKnown RBP eCLIP10.85□□□□□ -0.67
TPM3-213ENST00000368545 TMOD3Q9NYL9 352 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 DICER1Q9UPY3 1922 aaKnown RBP10.85□□□□□ -0.67
TPM3-213ENST00000368545 ERBB4Q15303 1308 aa10.85□□□□□ -0.67
TPM3-213ENST00000368545 SMARCA5O60264 1052 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms