RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 GPAMQ9HCL2 828 aa9.37□□□□□ -0.91
VPS13A-201ENST00000355766 C4AP0C0L4 1744 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 LOC102724428A0A0B4J2F2 783 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 CYP27B1O15528 508 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 MX2P20592 715 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 SIK1P57059 783 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 C4orf17Q53FE4 359 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 OXLD1Q5BKU9 147 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 TMEM214Q6NUQ4 689 aaKnown RBP9.36□□□□□ -0.91
VPS13A-201ENST00000355766 COG3Q96JB2 828 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 ETNK1Q9HBU6 452 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 ENAMQ9NRM1 1142 aa9.36□□□□□ -0.91
VPS13A-201ENST00000355766 BRCA1P38398 1863 aaKnown RBP9.36□□□□□ -0.91
VPS13A-201ENST00000355766 A0A1B0GTH6 734 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 BCRP11274 1271 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 DPEP1P16444 411 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 ABL2P42684 1182 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 GNASQ5JWF2 1037 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 KANK3Q6NY19 840 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 PIGBQ92521 554 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 CCDC87Q9NVE4 849 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 RNF181Q9P0P0 153 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 KDRP35968 1356 aa9.35□□□□□ -0.91
VPS13A-201ENST00000355766 ITGB4P16144 1822 aa9.34□□□□□ -0.91
VPS13A-201ENST00000355766 ARFGEF1Q9Y6D6 1849 aa9.34□□□□□ -0.91
VPS13A-201ENST00000355766 CENPBP07199 599 aaPredicted RBP9.34□□□□□ -0.91
VPS13A-201ENST00000355766 FBLN1P23142 703 aa9.34□□□□□ -0.91
VPS13A-201ENST00000355766 ITPK1Q13572 414 aa9.34□□□□□ -0.91
VPS13A-201ENST00000355766 DCAF5Q96JK2 942 aa9.34□□□□□ -0.91
VPS13A-201ENST00000355766 PRKRIP1Q9H875 184 aaPredicted RBP9.34□□□□□ -0.91
VPS13A-201ENST00000355766 RRAGCQ9HB90 399 aa9.34□□□□□ -0.91
VPS13A-201ENST00000355766 INSRP06213 1382 aa9.34□□□□□ -0.91
VPS13A-201ENST00000355766 NCAPD2Q15021 1401 aa9.33□□□□□ -0.92
VPS13A-201ENST00000355766 KCNA3P22001 575 aa9.33□□□□□ -0.92
VPS13A-201ENST00000355766 GTF2E1P29083 439 aaPredicted RBP9.33□□□□□ -0.92
VPS13A-201ENST00000355766 RRS1Q15050 365 aaKnown RBP9.33□□□□□ -0.92
VPS13A-201ENST00000355766 RALBP1Q15311 655 aa9.33□□□□□ -0.92
VPS13A-201ENST00000355766 NLGN1Q8N2Q7 840 aa9.33□□□□□ -0.92
VPS13A-201ENST00000355766 CFHR5Q9BXR6 569 aa9.33□□□□□ -0.92
VPS13A-201ENST00000355766 DNMT3AQ9Y6K1 912 aaPredicted RBP9.33□□□□□ -0.92
VPS13A-201ENST00000355766 CNTNAP5Q8WYK1 1306 aa9.32□□□□□ -0.92
VPS13A-201ENST00000355766 KDM6AO15550 1401 aaPredicted RBP9.32□□□□□ -0.92
VPS13A-201ENST00000355766 MSX1P28360 303 aa9.32□□□□□ -0.92
VPS13A-201ENST00000355766 UBAP2LQ14157 1087 aaKnown RBP9.32□□□□□ -0.92
VPS13A-201ENST00000355766 RUBCNLQ9H714 662 aa9.32□□□□□ -0.92
VPS13A-201ENST00000355766 NSFL1CQ9UNZ2 370 aaKnown RBP9.32□□□□□ -0.92
VPS13A-201ENST00000355766 FLT4P35916 1363 aa9.32□□□□□ -0.92
VPS13A-201ENST00000355766 KIF24Q5T7B8 1368 aa9.32□□□□□ -0.92
VPS13A-201ENST00000355766 GYS1P13807 737 aa9.31□□□□□ -0.92
VPS13A-201ENST00000355766 SCNN1DP51172 638 aa9.31□□□□□ -0.92
VPS13A-201ENST00000355766 TLR1Q15399 786 aa9.31□□□□□ -0.92
VPS13A-201ENST00000355766 WASHC4Q2M389 1173 aa9.31□□□□□ -0.92
VPS13A-201ENST00000355766 NEDD1Q8NHV4 660 aa9.31□□□□□ -0.92
VPS13A-201ENST00000355766 TMOD3Q9NYL9 352 aa9.31□□□□□ -0.92
VPS13A-201ENST00000355766 PIM2Q9P1W9 311 aa9.31□□□□□ -0.92
VPS13A-201ENST00000355766 RTCBQ9Y3I0 505 aaKnown RBP9.31□□□□□ -0.92
VPS13A-201ENST00000355766 PARP3Q9Y6F1 533 aa9.31□□□□□ -0.92
VPS13A-201ENST00000355766 ZNF831Q5JPB2 1677 aa9.31□□□□□ -0.92
VPS13A-201ENST00000355766 MCM6Q14566 821 aa9.3□□□□□ -0.92
VPS13A-201ENST00000355766 SUZ12Q15022 739 aaKnown RBP9.3□□□□□ -0.92
VPS13A-201ENST00000355766 DALRD3Q5D0E6 543 aaKnown RBP9.3□□□□□ -0.92
VPS13A-201ENST00000355766 TRAPPC3LQ5T215 181 aa9.3□□□□□ -0.92
VPS13A-201ENST00000355766 GPAT2Q6NUI2 795 aa9.3□□□□□ -0.92
VPS13A-201ENST00000355766 RHBDD1Q8TEB9 315 aa9.3□□□□□ -0.92
VPS13A-201ENST00000355766 ASAP1Q9ULH1 1129 aa9.3□□□□□ -0.92
VPS13A-201ENST00000355766 CNTNAP4Q9C0A0 1308 aa9.3□□□□□ -0.92
VPS13A-201ENST00000355766 COL5A3P25940 1745 aaPredicted RBP9.29□□□□□ -0.92
VPS13A-201ENST00000355766 INHAP05111 366 aa9.29□□□□□ -0.92
VPS13A-201ENST00000355766 MAP2K3P46734 347 aa9.29□□□□□ -0.92
VPS13A-201ENST00000355766 LBRQ14739 615 aaKnown RBP9.29□□□□□ -0.92
VPS13A-201ENST00000355766 MAP7D1Q3KQU3 841 aa9.29□□□□□ -0.92
VPS13A-201ENST00000355766 HSP90AB2PQ58FF8 381 aa9.29□□□□□ -0.92
VPS13A-201ENST00000355766 PGBD3Q8N328 593 aa9.29□□□□□ -0.92
VPS13A-201ENST00000355766 PLPP7Q8NBV4 271 aa9.29□□□□□ -0.92
VPS13A-201ENST00000355766 TIAM2Q8IVF5 1701 aa9.28□□□□□ -0.92
VPS13A-201ENST00000355766 OIP5O43482 229 aa9.28□□□□□ -0.92
VPS13A-201ENST00000355766 VEGFAP15692 232 aaPredicted RBP9.28□□□□□ -0.92
VPS13A-201ENST00000355766 GDF10P55107 478 aa9.28□□□□□ -0.92
VPS13A-201ENST00000355766 SEMA3FQ13275 785 aa9.28□□□□□ -0.92
VPS13A-201ENST00000355766 BEND7Q8N7W2 519 aaPredicted RBP9.28□□□□□ -0.92
VPS13A-201ENST00000355766 OXCT2Q9BYC2 517 aaPredicted RBP9.28□□□□□ -0.92
VPS13A-201ENST00000355766 ATG3Q9NT62 314 aa9.28□□□□□ -0.92
VPS13A-201ENST00000355766 PHF24Q9UPV7 400 aa9.28□□□□□ -0.92
VPS13A-201ENST00000355766 SPG7Q9UQ90 795 aa9.28□□□□□ -0.92
VPS13A-201ENST00000355766 MYBBP1AQ9BQG0 1328 aaKnown RBP9.28□□□□□ -0.92
VPS13A-201ENST00000355766 GLTPD2A6NH11 291 aa9.27□□□□□ -0.93
VPS13A-201ENST00000355766 PHF20L1A8MW92 1017 aa9.27□□□□□ -0.93
VPS13A-201ENST00000355766 FOXN1O15353 648 aa9.27□□□□□ -0.93
VPS13A-201ENST00000355766 RFC4P35249 363 aa9.27□□□□□ -0.93
VPS13A-201ENST00000355766 EFHC2Q5JST6 749 aa9.27□□□□□ -0.93
VPS13A-201ENST00000355766 SLC4A9Q96Q91 983 aa9.27□□□□□ -0.93
VPS13A-201ENST00000355766 GGNBP2Q9H3C7 697 aa9.27□□□□□ -0.93
VPS13A-201ENST00000355766 PRDM10Q9NQV6 1147 aa9.27□□□□□ -0.93
VPS13A-201ENST00000355766 LOC100996750A0A140TA64 210 aa9.26□□□□□ -0.93
VPS13A-201ENST00000355766 FYB1O15117 783 aa9.26□□□□□ -0.93
VPS13A-201ENST00000355766 RPS6KA4O75676 772 aa9.26□□□□□ -0.93
VPS13A-201ENST00000355766 PHKG2P15735 406 aa9.26□□□□□ -0.93
VPS13A-201ENST00000355766 CHRNA5P30532 468 aa9.26□□□□□ -0.93
VPS13A-201ENST00000355766 PLA2G4AP47712 749 aa9.26□□□□□ -0.93
VPS13A-201ENST00000355766 DDR1Q08345 913 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms