RNA–Protein interactions for RNA: ENST00000351288.10

SMPD4-201, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2 BASIC

Gene SMPD4, Length 3,661 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-201ENST00000351288 GOLGA8AA7E2F4 631 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 UBE2Q2LH0YL09 131 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 PDE8BO95263 885 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 ERFEQ4G0M1 354 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 CCDC186Q7Z3E2 898 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 SLC12A7Q9Y666 1083 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 MCAMP43121 646 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 ZNF165P49910 485 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 PUM3Q15397 648 aaKnown RBP12.12□□□□□ -0.47
SMPD4-201ENST00000351288 HS1BP3Q53T59 392 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 APPBP2Q92624 585 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 A0A1B0GVL5 298 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 METAP2P50579 478 aaKnown RBP eCLIP12.12□□□□□ -0.47
SMPD4-201ENST00000351288 RESTQ13127 1097 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 SAFBQ15424 915 aaKnown RBP eCLIP12.12□□□□□ -0.47
SMPD4-201ENST00000351288 PTPN21Q16825 1174 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 HSP90AA4PQ58FG1 418 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 MFSD6Q6ZSS7 791 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 CCAR1Q8IX12 1150 aaKnown RBP12.12□□□□□ -0.47
SMPD4-201ENST00000351288 SCAND2PQ9GZW5 306 aaPredicted RBP12.12□□□□□ -0.47
SMPD4-201ENST00000351288 GOLPH3LQ9H4A5 285 aa12.12□□□□□ -0.47
SMPD4-201ENST00000351288 AFDNP55196 1824 aaKnown RBP12.11□□□□□ -0.47
SMPD4-201ENST00000351288 RIMBP2O15034 1052 aa12.11□□□□□ -0.47
SMPD4-201ENST00000351288 PDILTQ8N807 584 aa12.11□□□□□ -0.47
SMPD4-201ENST00000351288 SLC4A9Q96Q91 983 aa12.11□□□□□ -0.47
SMPD4-201ENST00000351288 N4BP2Q86UW6 1770 aaPredicted RBP12.11□□□□□ -0.47
SMPD4-201ENST00000351288 WTIPA6NIX2 430 aaPredicted RBP12.11□□□□□ -0.47
SMPD4-201ENST00000351288 TPM2P07951 284 aa12.11□□□□□ -0.47
SMPD4-201ENST00000351288 HMGB1P09429 215 aaKnown RBP12.11□□□□□ -0.47
SMPD4-201ENST00000351288 ADD1P35611 737 aaKnown RBP12.11□□□□□ -0.47
SMPD4-201ENST00000351288 C11orf57Q6ZUT1 292 aaPredicted RBP12.11□□□□□ -0.47
SMPD4-201ENST00000351288 SPATA5Q8NB90 893 aa12.11□□□□□ -0.47
SMPD4-201ENST00000351288 SMARCC1Q92922 1105 aaPredicted RBP12.11□□□□□ -0.47
SMPD4-201ENST00000351288 PDIA3P30101 505 aaKnown RBP12.1□□□□□ -0.47
SMPD4-201ENST00000351288 USP5P45974 858 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 ITPK1Q13572 414 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 ZNF592Q92610 1267 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 RPGRQ92834 1020 aaKnown RBP12.1□□□□□ -0.47
SMPD4-201ENST00000351288 SENP2Q9HC62 589 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 PIH1D3Q9NQM4 214 aaKnown RBP12.1□□□□□ -0.47
SMPD4-201ENST00000351288 LETM1O95202 739 aaPredicted RBP12.1□□□□□ -0.47
SMPD4-201ENST00000351288 UQCRFS1P1P0C7P4 283 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 PDE6AP16499 860 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 IL6STP40189 918 aaPredicted RBP12.1□□□□□ -0.47
SMPD4-201ENST00000351288 CHRNDQ07001 517 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 TTF1Q15361 905 aaPredicted RBP12.1□□□□□ -0.47
SMPD4-201ENST00000351288 ZMYM1Q5SVZ6 1142 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 TPTE2Q6XPS3 522 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 FAM200AQ8TCP9 573 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 ISCA1Q9BUE6 129 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 HELLSQ9NRZ9 838 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 ZFYP08048 801 aaPredicted RBP12.1□□□□□ -0.47
SMPD4-201ENST00000351288 FILIP1Q7Z7B0 1213 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 FSIP1Q8NA03 581 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 LPIN2Q92539 896 aa12.1□□□□□ -0.47
SMPD4-201ENST00000351288 C16orf45Q96MC5 204 aaPredicted RBP12.1□□□□□ -0.47
SMPD4-201ENST00000351288 CYP2D7A0A087X1C5 515 aa12.09□□□□□ -0.47
SMPD4-201ENST00000351288 PES1O00541 588 aaKnown RBP12.09□□□□□ -0.47
SMPD4-201ENST00000351288 RBM5P52756 815 aaKnown RBP eCLIP12.09□□□□□ -0.47
SMPD4-201ENST00000351288 NAA16Q6N069 864 aaPredicted RBP12.09□□□□□ -0.47
SMPD4-201ENST00000351288 CFAP45Q9UL16 551 aa12.09□□□□□ -0.47
SMPD4-201ENST00000351288 AATFQ9NY61 560 aaKnown RBP eCLIP12.09□□□□□ -0.47
SMPD4-201ENST00000351288 PALLDQ8WX93 1383 aa12.09□□□□□ -0.47
SMPD4-201ENST00000351288 IARSP41252 1262 aaKnown RBP12.09□□□□□ -0.47
SMPD4-201ENST00000351288 TRIM22Q8IYM9 498 aa12.09□□□□□ -0.47
SMPD4-201ENST00000351288 ZNF396Q96N95 335 aaPredicted RBP12.09□□□□□ -0.47
SMPD4-201ENST00000351288 ZBTB43O43298 467 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 FAM196AQ6ZSG2 479 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 ALG1Q9BT22 464 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 SCN11AQ9UI33 1791 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 TRPM3Q9HCF6 1732 aaPredicted RBP12.08□□□□□ -0.48
SMPD4-201ENST00000351288 FOXP2O15409 715 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 RASGRF1Q13972 1273 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 UVSSAQ2YD98 709 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 MSL1Q68DK7 614 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 STX8Q9UNK0 236 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 CLIC4Q9Y696 253 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 CAMTA1Q9Y6Y1 1673 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 TRIM37O94972 964 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 FDPSP14324 419 aaKnown RBP12.08□□□□□ -0.48
SMPD4-201ENST00000351288 SPECC1Q5M775 1068 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 VAT1LQ9HCJ6 419 aa12.08□□□□□ -0.48
SMPD4-201ENST00000351288 PFKFB2O60825 505 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 TRAPPC3LQ5T215 181 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 AMOTL1Q8IY63 956 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 CLSTN2Q9H4D0 955 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 MKNK2Q9HBH9 465 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 PRDM10Q9NQV6 1147 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 USP54Q70EL1 1684 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 RRP9O43818 475 aaKnown RBP12.07□□□□□ -0.48
SMPD4-201ENST00000351288 HMGN5P82970 282 aaKnown RBP12.07□□□□□ -0.48
SMPD4-201ENST00000351288 ILDR1Q86SU0 546 aaPredicted RBP12.07□□□□□ -0.48
SMPD4-201ENST00000351288 ZNF622Q969S3 477 aaKnown RBP eCLIP12.07□□□□□ -0.48
SMPD4-201ENST00000351288 SIPA1L3O60292 1781 aaPredicted RBP12.07□□□□□ -0.48
SMPD4-201ENST00000351288 EXOSC10Q01780 885 aaKnown RBP12.07□□□□□ -0.48
SMPD4-201ENST00000351288 CCDC144BQ3MJ40 725 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 TSGA10IPQ3SY00 556 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 CELF1Q92879 486 aaKnown RBP12.07□□□□□ -0.48
SMPD4-201ENST00000351288 OVOS2A0A0G2JMS6 1433 aa12.07□□□□□ -0.48
SMPD4-201ENST00000351288 MAGEB6P1A0A0J9YX57 407 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms