RNA–Protein interactions for RNA: ENST00000347037.9

SYNE1-202, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,798 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-202ENST00000347037 NEK11Q8NG66 645 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 AXIN2Q9Y2T1 843 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 MROH7-TTC4A0A0A0MT08 1334 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 KDM4FA0A1W2PPD8 638 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 RALYLQ86SE5 291 aaKnown RBP12.8□□□□□ -0.36
SYNE1-202ENST00000347037 RAPGEF4Q8WZA2 1011 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 NLRP2Q9NX02 1062 aa12.8□□□□□ -0.36
SYNE1-202ENST00000347037 CBFA2T2O43439 604 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 WDHD1O75717 1129 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-202ENST00000347037 RXRAP19793 462 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 GTF2E1P29083 439 aaPredicted RBP12.79□□□□□ -0.36
SYNE1-202ENST00000347037 IMMTQ16891 758 aaKnown RBP12.79□□□□□ -0.36
SYNE1-202ENST00000347037 OLFM4Q6UX06 510 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 ANKLE2Q86XL3 938 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 AIFM3Q96NN9 605 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 PHLPP2Q6ZVD8 1323 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 CYP2C19P33261 490 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 GNG11P61952 73 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 BRAPQ7Z569 592 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 SLC52A2Q9HAB3 445 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 NEDD4P46934 1319 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 LMO7Q8WWI1 1683 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 HNRNPH2P55795 449 aaKnown RBP12.79□□□□□ -0.36
SYNE1-202ENST00000347037 ZC3H6P61129 1189 aaKnown RBP12.79□□□□□ -0.36
SYNE1-202ENST00000347037 MYL5Q02045 173 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 DHX8Q14562 1220 aaKnown RBP12.79□□□□□ -0.36
SYNE1-202ENST00000347037 LRRC24Q50LG9 513 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 OSBP2Q969R2 916 aa12.79□□□□□ -0.36
SYNE1-202ENST00000347037 ZCCHC17Q9NP64 241 aaKnown RBP12.79□□□□□ -0.36
SYNE1-202ENST00000347037 CMA1P23946 247 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 RABL6Q3YEC7 729 aaPredicted RBP12.78□□□□□ -0.36
SYNE1-202ENST00000347037 ARHGEF25Q86VW2 580 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 MRC1P22897 1456 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 TUBB4AP04350 444 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 CASQ1P31415 396 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 TRIM65Q6PJ69 517 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 STK11IPQ8N1F8 1099 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 CLIC6Q96NY7 704 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 FANCLQ9NW38 375 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 PALLDQ8WX93 1383 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 MYH15Q9Y2K3 1946 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 ZSCAN12O43309 604 aa12.78□□□□□ -0.36
SYNE1-202ENST00000347037 KIF23Q02241 960 aaPredicted RBP12.78□□□□□ -0.36
SYNE1-202ENST00000347037 LRRFIP1Q32MZ4 808 aaKnown RBP12.78□□□□□ -0.36
SYNE1-202ENST00000347037 AXDND1Q5T1B0 1012 aaPredicted RBP12.78□□□□□ -0.36
SYNE1-202ENST00000347037 KIF1AQ12756 1690 aa12.77□□□□□ -0.36
SYNE1-202ENST00000347037 NFAT5O94916 1531 aa12.77□□□□□ -0.36
SYNE1-202ENST00000347037 A0A1B0GUL7 405 aa12.77□□□□□ -0.36
SYNE1-202ENST00000347037 IKBKBO14920 756 aa12.77□□□□□ -0.36
SYNE1-202ENST00000347037 TADA3O75528 432 aa12.77□□□□□ -0.36
SYNE1-202ENST00000347037 SNRPA1P09661 255 aaKnown RBP12.77□□□□□ -0.36
SYNE1-202ENST00000347037 KCNJ6P48051 423 aa12.77□□□□□ -0.36
SYNE1-202ENST00000347037 ZSWIM4Q9H7M6 989 aa12.77□□□□□ -0.36
SYNE1-202ENST00000347037 FANCGO15287 622 aa12.77□□□□□ -0.37
SYNE1-202ENST00000347037 ATG9AQ7Z3C6 839 aa12.77□□□□□ -0.37
SYNE1-202ENST00000347037 CCDC85AQ96PX6 553 aaPredicted RBP12.77□□□□□ -0.37
SYNE1-202ENST00000347037 PPP2R2CQ9Y2T4 447 aa12.77□□□□□ -0.37
SYNE1-202ENST00000347037 PARP3Q9Y6F1 533 aa12.77□□□□□ -0.37
SYNE1-202ENST00000347037 LAMA4Q16363 1823 aa12.77□□□□□ -0.37
SYNE1-202ENST00000347037 EFCAB8A8MWE9 144 aa12.77□□□□□ -0.37
SYNE1-202ENST00000347037 SPECC1Q5M775 1068 aa12.77□□□□□ -0.37
SYNE1-202ENST00000347037 REXO1L1PQ8IX06 675 aa12.77□□□□□ -0.37
SYNE1-202ENST00000347037 SRRTQ9BXP5 876 aaKnown RBP12.77□□□□□ -0.37
SYNE1-202ENST00000347037 HSD3B7Q9H2F3 369 aa12.77□□□□□ -0.37
SYNE1-202ENST00000347037 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.77□□□□□ -0.37
SYNE1-202ENST00000347037 MST1RQ04912 1400 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 FGAP02671 866 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 OAS2P29728 719 aaKnown RBP12.76□□□□□ -0.37
SYNE1-202ENST00000347037 ALG1Q9BT22 464 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 HPS5Q9UPZ3 1129 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 ZRANB2O95218 330 aaKnown RBP eCLIP12.76□□□□□ -0.37
SYNE1-202ENST00000347037 ST5P78524 1137 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 TTC39AQ5SRH9 613 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 VSTM4Q8IW00 320 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 CNNM3Q8NE01 707 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 ORAI2Q96SN7 254 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 ADKP55263 362 aaKnown RBP12.76□□□□□ -0.37
SYNE1-202ENST00000347037 SLC39A14Q15043 492 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 KARSQ15046 597 aaKnown RBP12.76□□□□□ -0.37
SYNE1-202ENST00000347037 NCOA7Q8NI08 942 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 WDR24Q96S15 920 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 ABCC6O95255 1503 aa12.76□□□□□ -0.37
SYNE1-202ENST00000347037 CAMTA1Q9Y6Y1 1673 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 VWA3AA6NCI4 1184 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 IL15P40933 162 aaPredicted RBP12.75□□□□□ -0.37
SYNE1-202ENST00000347037 PPP2R3AQ06190 1150 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 VPS37DQ86XT2 251 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 PHKBQ93100 1093 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 BAG1Q99933 345 aaPredicted RBP12.75□□□□□ -0.37
SYNE1-202ENST00000347037 DESI2Q9BSY9 194 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 PUS3Q9BZE2 481 aaKnown RBP12.75□□□□□ -0.37
SYNE1-202ENST00000347037 ZNF213O14771 459 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 TPM1P09493 284 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 CSB-PGBD3P0DP91 1061 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 GYS2P54840 703 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 CCDC158Q5M9N0 1113 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 SHC4Q6S5L8 630 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 JMYQ8N9B5 988 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 SASH3O75995 380 aa12.75□□□□□ -0.37
SYNE1-202ENST00000347037 FOXO4P98177 505 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms