RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 FGAP02671 866 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 CTDSPL2Q05D32 466 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 SLC4A4Q9Y6R1 1079 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 UQCRFS1P1P0C7P4 283 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 HIBADHP31937 336 aaKnown RBP15.39■□□□□ 0.05
COL18A1-201ENST00000342220 NECTIN1Q15223 517 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 FAM173BQ6P4H8 233 aa15.39■□□□□ 0.05
COL18A1-201ENST00000342220 DYNLL1P63167 89 aaKnown RBP15.38■□□□□ 0.05
COL18A1-201ENST00000342220 IMMTQ16891 758 aaKnown RBP15.38■□□□□ 0.05
COL18A1-201ENST00000342220 DOK7Q18PE1 504 aa15.38■□□□□ 0.05
COL18A1-201ENST00000342220 RC3H1Q5TC82 1133 aaKnown RBP15.38■□□□□ 0.05
COL18A1-201ENST00000342220 LRSAM1Q6UWE0 723 aa15.38■□□□□ 0.05
COL18A1-201ENST00000342220 AATFQ9NY61 560 aaKnown RBP eCLIP15.38■□□□□ 0.05
COL18A1-201ENST00000342220 U3KPZ7 1027 aaPredicted RBP15.38■□□□□ 0.05
COL18A1-201ENST00000342220 CICQ96RK0 1608 aaPredicted RBP15.38■□□□□ 0.05
COL18A1-201ENST00000342220 CYP2D7A0A087X1C5 515 aa15.38■□□□□ 0.05
COL18A1-201ENST00000342220 DZIP1Q86YF9 867 aaKnown RBP15.38■□□□□ 0.05
COL18A1-201ENST00000342220 PARP3Q9Y6F1 533 aa15.38■□□□□ 0.05
COL18A1-201ENST00000342220 MYH14Q7Z406 1995 aaKnown RBP15.38■□□□□ 0.05
COL18A1-201ENST00000342220 PRDX5P30044 214 aa15.38■□□□□ 0.05
COL18A1-201ENST00000342220 UTP14CQ5TAP6 766 aaKnown RBP15.38■□□□□ 0.05
COL18A1-201ENST00000342220 APPBP2Q92624 585 aa15.38■□□□□ 0.05
COL18A1-201ENST00000342220 GPR108Q9NPR9 543 aa15.38■□□□□ 0.05
COL18A1-201ENST00000342220 DDR1Q08345 913 aa15.37■□□□□ 0.05
COL18A1-201ENST00000342220 ZMYM1Q5SVZ6 1142 aa15.37■□□□□ 0.05
COL18A1-201ENST00000342220 TMEM51Q9NW97 253 aa15.37■□□□□ 0.05
COL18A1-201ENST00000342220 TPCN1Q9ULQ1 816 aa15.37■□□□□ 0.05
COL18A1-201ENST00000342220 SMIM22K7EJ46 135 aa15.37■□□□□ 0.05
COL18A1-201ENST00000342220 CHRNA5P30532 468 aa15.37■□□□□ 0.05
COL18A1-201ENST00000342220 ME3Q16798 604 aa15.37■□□□□ 0.05
COL18A1-201ENST00000342220 FAM184AQ8NB25 1140 aa15.37■□□□□ 0.05
COL18A1-201ENST00000342220 MYL10Q9BUA6 226 aa15.37■□□□□ 0.05
COL18A1-201ENST00000342220 FIBPO43427 364 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 MAPK8IP2Q13387 824 aaPredicted RBP15.36■□□□□ 0.05
COL18A1-201ENST00000342220 RNF214Q8ND24 703 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 INTS4Q96HW7 963 aaKnown RBP15.36■□□□□ 0.05
COL18A1-201ENST00000342220 ZNF830Q96NB3 372 aaPredicted RBP15.36■□□□□ 0.05
COL18A1-201ENST00000342220 ZNF804BA4D1E1 1349 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 B4E1Z4 1266 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 GJB2P29033 226 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 DIXDC1Q155Q3 683 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 NAA16Q6N069 864 aaPredicted RBP15.36■□□□□ 0.05
COL18A1-201ENST00000342220 BSDC1Q9NW68 430 aaPredicted RBP15.36■□□□□ 0.05
COL18A1-201ENST00000342220 RAD21O60216 631 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 ZSCAN20P17040 1043 aaPredicted RBP15.36■□□□□ 0.05
COL18A1-201ENST00000342220 ZSCAN25Q6NSZ9 544 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 LCORLQ8N3X6 602 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 VGLL2Q8N8G2 317 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 PDLIM2Q96JY6 352 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 ARFGEF2Q9Y6D5 1785 aa15.36■□□□□ 0.05
COL18A1-201ENST00000342220 JAK2O60674 1132 aa15.35■□□□□ 0.05
COL18A1-201ENST00000342220 MBD3O95983 291 aa15.35■□□□□ 0.05
COL18A1-201ENST00000342220 TTF1Q15361 905 aaPredicted RBP15.35■□□□□ 0.05
COL18A1-201ENST00000342220 STOX1Q6ZVD7 989 aa15.35■□□□□ 0.05
COL18A1-201ENST00000342220 FAM84BQ96KN1 310 aaPredicted RBP15.35■□□□□ 0.05
COL18A1-201ENST00000342220 MTERF4Q7Z6M4 381 aaKnown RBP15.35■□□□□ 0.05
COL18A1-201ENST00000342220 NUP133Q8WUM0 1156 aa15.35■□□□□ 0.05
COL18A1-201ENST00000342220 ATF5Q9Y2D1 282 aaPredicted RBP15.35■□□□□ 0.05
COL18A1-201ENST00000342220 E7EWF7 191 aa15.35■□□□□ 0.05
COL18A1-201ENST00000342220 ZBTB7AO95365 584 aa15.35■□□□□ 0.05
COL18A1-201ENST00000342220 H3BQV1 296 aa15.34■□□□□ 0.05
COL18A1-201ENST00000342220 ONECUT3O60422 494 aaPredicted RBP15.34■□□□□ 0.05
COL18A1-201ENST00000342220 GADD45BO75293 160 aaPredicted RBP15.34■□□□□ 0.05
COL18A1-201ENST00000342220 IFFO2Q5TF58 517 aa15.34■□□□□ 0.05
COL18A1-201ENST00000342220 LARP1BQ659C4 914 aaKnown RBP15.34■□□□□ 0.05
COL18A1-201ENST00000342220 MICU3Q86XE3 530 aa15.34■□□□□ 0.05
COL18A1-201ENST00000342220 HELLSQ9NRZ9 838 aa15.34■□□□□ 0.05
COL18A1-201ENST00000342220 CPLX1O14810 134 aa15.34■□□□□ 0.05
COL18A1-201ENST00000342220 RBM5P52756 815 aaKnown RBP eCLIP15.34■□□□□ 0.05
COL18A1-201ENST00000342220 RIC1Q4ADV7 1423 aa15.34■□□□□ 0.05
COL18A1-201ENST00000342220 RANBP6O60518 1105 aaKnown RBP15.33■□□□□ 0.05
COL18A1-201ENST00000342220 ADD2P35612 726 aa15.33■□□□□ 0.05
COL18A1-201ENST00000342220 SF3B3Q15393 1217 aaKnown RBP15.33■□□□□ 0.05
COL18A1-201ENST00000342220 MXD3Q9BW11 206 aa15.33■□□□□ 0.05
COL18A1-201ENST00000342220 CDK11BP21127 795 aaKnown RBP15.33■□□□□ 0.04
COL18A1-201ENST00000342220 RPS6KB1P23443 525 aa15.33■□□□□ 0.04
COL18A1-201ENST00000342220 IL17RAQ96F46 866 aa15.33■□□□□ 0.04
COL18A1-201ENST00000342220 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.33■□□□□ 0.04
COL18A1-201ENST00000342220 NUP188Q5SRE5 1749 aa15.33■□□□□ 0.04
COL18A1-201ENST00000342220 CBX1P83916 185 aa15.33■□□□□ 0.04
COL18A1-201ENST00000342220 STK32BQ9NY57 414 aa15.33■□□□□ 0.04
COL18A1-201ENST00000342220 FBXO3Q9UK99 471 aa15.33■□□□□ 0.04
COL18A1-201ENST00000342220 CARMIL3Q8ND23 1372 aa15.33■□□□□ 0.04
COL18A1-201ENST00000342220 ZFYP08048 801 aaPredicted RBP15.32■□□□□ 0.04
COL18A1-201ENST00000342220 TERF1P54274 439 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 GTF2IP78347 998 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 GPSM2P81274 684 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 SLC27A3Q5K4L6 730 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 TFIP11Q9UBB9 837 aaKnown RBP15.32■□□□□ 0.04
COL18A1-201ENST00000342220 SAP30BPQ9UHR5 308 aaKnown RBP15.32■□□□□ 0.04
COL18A1-201ENST00000342220 OTUD7BQ6GQQ9 843 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 RGS17Q9UGC6 210 aaPredicted RBP15.32■□□□□ 0.04
COL18A1-201ENST00000342220 NOL7Q9UMY1 257 aaKnown RBP15.32■□□□□ 0.04
COL18A1-201ENST00000342220 ATRNO75882 1429 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 MAGEB6P1A0A0J9YX57 407 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 PRC1O43663 620 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 GRAPQ13588 217 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 HS1BP3Q53T59 392 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 USP48Q86UV5 1035 aa15.32■□□□□ 0.04
COL18A1-201ENST00000342220 CMTR1Q8N1G2 835 aaKnown RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms