RNA–Protein interactions for RNA: ENST00000339162.11

PDLIM2-203, Transcript of PDZ and LIM domain 2, humanhuman

TSL 1 (best) BASIC

Gene PDLIM2, Length 2,226 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-203ENST00000339162 NAP1L2Q9ULW6 460 aaPredicted RBP26.54■■□□□ 1.84
PDLIM2-203ENST00000339162 GTF3C6Q969F1 213 aa26.54■■□□□ 1.84
PDLIM2-203ENST00000339162 SLC4A4Q9Y6R1 1079 aa26.54■■□□□ 1.84
PDLIM2-203ENST00000339162 GSG1L2A8MUP6 293 aa26.53■■□□□ 1.84
PDLIM2-203ENST00000339162 PRPF40AO75400 957 aaKnown RBP26.53■■□□□ 1.84
PDLIM2-203ENST00000339162 INCENPQ9NQS7 918 aa26.53■■□□□ 1.84
PDLIM2-203ENST00000339162 MB21D2Q8IYB1 491 aaPredicted RBP26.53■■□□□ 1.84
PDLIM2-203ENST00000339162 NCOA7Q8NI08 942 aa26.53■■□□□ 1.84
PDLIM2-203ENST00000339162 ZNF384Q8TF68 577 aa26.53■■□□□ 1.84
PDLIM2-203ENST00000339162 RBM17Q96I25 401 aaKnown RBP26.53■■□□□ 1.84
PDLIM2-203ENST00000339162 NAPBQ9H115 298 aa26.53■■□□□ 1.84
PDLIM2-203ENST00000339162 NSFL1CQ9UNZ2 370 aaKnown RBP26.53■■□□□ 1.84
PDLIM2-203ENST00000339162 IRS2Q9Y4H2 1338 aa26.52■■□□□ 1.84
PDLIM2-203ENST00000339162 ZSCAN22P10073 491 aaPredicted RBP26.52■■□□□ 1.84
PDLIM2-203ENST00000339162 GPSM2P81274 684 aa26.52■■□□□ 1.84
PDLIM2-203ENST00000339162 SCRN1Q12765 414 aa26.52■■□□□ 1.84
PDLIM2-203ENST00000339162 RALYLQ86SE5 291 aaKnown RBP26.52■■□□□ 1.84
PDLIM2-203ENST00000339162 AGXT2Q9BYV1 514 aa26.52■■□□□ 1.84
PDLIM2-203ENST00000339162 LMBRD1Q9NUN5 540 aa26.52■■□□□ 1.84
PDLIM2-203ENST00000339162 JAK2O60674 1132 aa26.51■■□□□ 1.84
PDLIM2-203ENST00000339162 XDHP47989 1333 aa26.51■■□□□ 1.83
PDLIM2-203ENST00000339162 PRC1O43663 620 aa26.51■■□□□ 1.83
PDLIM2-203ENST00000339162 ANTXR2P58335 489 aa26.51■■□□□ 1.83
PDLIM2-203ENST00000339162 CCT2P78371 535 aaKnown RBP26.51■■□□□ 1.83
PDLIM2-203ENST00000339162 MSL1Q68DK7 614 aa26.51■■□□□ 1.83
PDLIM2-203ENST00000339162 SEMA3EO15041 775 aa26.5■■□□□ 1.83
PDLIM2-203ENST00000339162 MCM5P33992 734 aa26.5■■□□□ 1.83
PDLIM2-203ENST00000339162 NLGN1Q8N2Q7 840 aa26.5■■□□□ 1.83
PDLIM2-203ENST00000339162 VPS37CA5D8V6 355 aaPredicted RBP26.5■■□□□ 1.83
PDLIM2-203ENST00000339162 CTDSPL2Q05D32 466 aa26.5■■□□□ 1.83
PDLIM2-203ENST00000339162 LARP1BQ659C4 914 aaKnown RBP26.5■■□□□ 1.83
PDLIM2-203ENST00000339162 SDR42E1Q8WUS8 393 aa26.5■■□□□ 1.83
PDLIM2-203ENST00000339162 LEMD3Q9Y2U8 911 aa26.5■■□□□ 1.83
PDLIM2-203ENST00000339162 PNPLA7Q6ZV29 1317 aa26.5■■□□□ 1.83
PDLIM2-203ENST00000339162 HMGB2P26583 209 aaKnown RBP26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 PRDX5P30044 214 aa26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 NAA16Q6N069 864 aaPredicted RBP26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 NCOA5Q9HCD5 579 aaKnown RBP26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 MTMR6Q9Y217 621 aa26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 DDX49Q9Y6V7 483 aaKnown RBP26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 MAGEB6P1A0A0J9YX57 407 aa26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 PPFIA3O75145 1194 aa26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 PTMSP20962 102 aa26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 TDO2P48775 406 aa26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 DYNLL1P63167 89 aaKnown RBP26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 ALX1Q15699 326 aa26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 STK11IPQ8N1F8 1099 aa26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 GDPD2Q9HCC8 539 aa26.49■■□□□ 1.83
PDLIM2-203ENST00000339162 PFKFB2O60825 505 aa26.48■■□□□ 1.83
PDLIM2-203ENST00000339162 TRDNQ13061 729 aa26.48■■□□□ 1.83
PDLIM2-203ENST00000339162 DDX11Q96FC9 970 aa26.48■■□□□ 1.83
PDLIM2-203ENST00000339162 MECOMQ03112 1051 aa26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 SKOR2Q2VWA4 1001 aaPredicted RBP26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 NEDD4P46934 1319 aa26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 B4E1Z4 1266 aa26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 UFL1O94874 794 aa26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 F13A1P00488 732 aa26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 MMP10P09238 476 aa26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 PDIA3P30101 505 aaKnown RBP26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 NSUN4Q96CB9 384 aaKnown RBP26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 CACNA1SQ13698 1873 aa26.47■■□□□ 1.83
PDLIM2-203ENST00000339162 GNAT2P19087 354 aa26.46■■□□□ 1.83
PDLIM2-203ENST00000339162 HOXA10P31260 410 aaPredicted RBP26.46■■□□□ 1.83
PDLIM2-203ENST00000339162 CYB5R4Q7L1T6 521 aa26.46■■□□□ 1.83
PDLIM2-203ENST00000339162 RIOK1Q9BRS2 568 aaKnown RBP26.46■■□□□ 1.83
PDLIM2-203ENST00000339162 TACC3Q9Y6A5 838 aa26.46■■□□□ 1.83
PDLIM2-203ENST00000339162 RAB11FIP4Q86YS3 637 aa26.46■■□□□ 1.83
PDLIM2-203ENST00000339162 NACAP1Q9BZK3 213 aa26.46■■□□□ 1.83
PDLIM2-203ENST00000339162 KLRG2A4D1S0 409 aaPredicted RBP26.45■■□□□ 1.82
PDLIM2-203ENST00000339162 NCLP19338 710 aaKnown RBP26.45■■□□□ 1.82
PDLIM2-203ENST00000339162 BRPF3Q9ULD4 1205 aa26.45■■□□□ 1.82
PDLIM2-203ENST00000339162 BBOX1O75936 387 aa26.45■■□□□ 1.82
PDLIM2-203ENST00000339162 EN1Q05925 392 aaPredicted RBP26.45■■□□□ 1.82
PDLIM2-203ENST00000339162 EZH2Q15910 746 aaKnown RBP26.45■■□□□ 1.82
PDLIM2-203ENST00000339162 ZMYM6O95789 1325 aa26.44■■□□□ 1.82
PDLIM2-203ENST00000339162 CDC37L1Q7L3B6 337 aa26.44■■□□□ 1.82
PDLIM2-203ENST00000339162 MYH13Q9UKX3 1938 aa26.44■■□□□ 1.82
PDLIM2-203ENST00000339162 CTDNEP1O95476 244 aa26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 FERMT3Q86UX7 667 aa26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 FLAD1Q8NFF5 587 aa26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 ZNF274Q96GC6 653 aaPredicted RBP26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 TNS1Q9HBL0 1735 aaKnown RBP26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 PDS5AQ29RF7 1337 aaKnown RBP26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 SMIM22K7EJ46 135 aa26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 FBXL16Q8N461 479 aa26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 CRAMP1Q96RY5 1269 aa26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 BRIP1Q9BX63 1249 aa26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 ANO8Q9HCE9 1232 aaPredicted RBP26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 GGA1Q9UJY5 639 aa26.43■■□□□ 1.82
PDLIM2-203ENST00000339162 KLF18A0A0U1RQI7 1052 aa26.42■■□□□ 1.82
PDLIM2-203ENST00000339162 KLHL40Q2TBA0 621 aa26.42■■□□□ 1.82
PDLIM2-203ENST00000339162 NSUN7Q8NE18 718 aaKnown RBP26.42■■□□□ 1.82
PDLIM2-203ENST00000339162 AATFQ9NY61 560 aaKnown RBP eCLIP26.42■■□□□ 1.82
PDLIM2-203ENST00000339162 ZNF804AQ7Z570 1209 aa26.42■■□□□ 1.82
PDLIM2-203ENST00000339162 TDRD7Q8NHU6 1098 aaKnown RBP26.42■■□□□ 1.82
PDLIM2-203ENST00000339162 POLLQ9UGP5 575 aa26.42■■□□□ 1.82
PDLIM2-203ENST00000339162 CNPY2Q9Y2B0 182 aa26.42■■□□□ 1.82
PDLIM2-203ENST00000339162 PARP3Q9Y6F1 533 aa26.42■■□□□ 1.82
PDLIM2-203ENST00000339162 MINDY4BA8MYZ0 360 aa26.41■■□□□ 1.82
PDLIM2-203ENST00000339162 RRP12Q5JTH9 1297 aaKnown RBP26.41■■□□□ 1.82
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms