RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 CAVIN4Q5BKX8 364 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 METTL24Q5JXM2 366 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 CCDC82Q8N4S0 544 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 IMPACTQ9P2X3 320 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 IFT140Q96RY7 1462 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 UAP1Q16222 522 aaPredicted RBP6.9□□□□□ -1.3
CSMD1-201ENST00000335551 ZSCAN29Q8IWY8 852 aaPredicted RBP6.9□□□□□ -1.3
CSMD1-201ENST00000335551 IL1RAPL2Q9NP60 686 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 CREB3O43889 395 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 KRT3P12035 628 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 U2AF2P26368 475 aaKnown RBP eCLIP6.9□□□□□ -1.3
CSMD1-201ENST00000335551 NCOA7Q8NI08 942 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 USP16Q9Y5T5 823 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 GOLGA8KD6RF30 607 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 LMOD1P29536 600 aaPredicted RBP6.9□□□□□ -1.3
CSMD1-201ENST00000335551 GUCY1B3Q02153 619 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 MFSD6Q6ZSS7 791 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 KIFAP3Q92845 792 aa6.9□□□□□ -1.3
CSMD1-201ENST00000335551 MRC2Q9UBG0 1479 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 TTC22Q5TAA0 569 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 ARMC9Q7Z3E5 817 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 IQCDQ96DY2 449 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 CABP2Q9NPB3 220 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 ORC6Q9Y5N6 252 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 CUL7Q14999 1698 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 PALM3A6NDB9 673 aaPredicted RBP6.9□□□□□ -1.31
CSMD1-201ENST00000335551 ZFXP17010 805 aaPredicted RBP6.9□□□□□ -1.31
CSMD1-201ENST00000335551 ARID5AQ03989 594 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 CUL4BQ13620 913 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 NRBF2Q96F24 287 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 EFCC1Q9HA90 598 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 EPS15L1Q9UBC2 864 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 MINDY4BA8MYZ0 360 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 IFNKQ9P0W0 207 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 PARP2Q9UGN5 583 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 STK38LQ9Y2H1 464 aa6.9□□□□□ -1.31
CSMD1-201ENST00000335551 TROVE2P10155 538 aaKnown RBP eCLIP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 SLC5A1P13866 664 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 SLFN5Q08AF3 891 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 MICU3Q86XE3 530 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 MRFAP1L1Q96HT8 127 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 SESN3P58005 492 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 KARSQ15046 597 aaKnown RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 GOLGA8QA0A0J9YX86 632 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 GOLGA8OA6NCC3 632 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 GOLGA8NF8WBI6 632 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 WDR46O15213 610 aaKnown RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 KIF1CO43896 1103 aaKnown RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 KRT23Q9C075 422 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 RAB17Q9H0T7 212 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 TFIP11Q9UBB9 837 aaKnown RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 SCOCQ9UIL1 159 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 F13A1P00488 732 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 TMED1Q13445 227 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 ZNF530Q6P9A1 599 aaPredicted RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 FAM71BQ8TC56 605 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 CCDC124Q96CT7 223 aaKnown RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 HAUS2Q9NVX0 235 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 SPG7Q9UQ90 795 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 SAMM50Q9Y512 469 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 RTL9Q8NET4 1388 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 RIOK3O14730 519 aaKnown RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 TATP17735 454 aaPredicted RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 ABTB2Q8N961 1025 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 TACO1Q9BSH4 297 aaKnown RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 BTBD11A6QL63 1104 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 FAM13AO94988 1023 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 RFX1P22670 979 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 NLRP6P59044 892 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 CFAP221Q4G0U5 840 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 BRAPQ7Z569 592 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 ZNF354CQ86Y25 554 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 NEK1Q96PY6 1258 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 TCHHQ07283 1943 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 RGS16O15492 202 aaPredicted RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 SYF2O95926 243 aaKnown RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 PPP1R2P41236 205 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 AFMP43652 599 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 IFIT1P09914 478 aaKnown RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 GJC1P36383 396 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 TRAF1Q13077 416 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 DDX21Q9NR30 783 aaKnown RBP eCLIP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 ATICP31939 592 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 TRIM60Q495X7 471 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 TMCO4Q5TGY1 634 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 ABTB1Q969K4 478 aaPredicted RBP6.89□□□□□ -1.31
CSMD1-201ENST00000335551 SLC26A6Q9BXS9 759 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 YY1AP1Q9H869 796 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 CNNM2Q9H8M5 875 aa6.89□□□□□ -1.31
CSMD1-201ENST00000335551 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP6.88□□□□□ -1.31
CSMD1-201ENST00000335551 ZNF444Q8N0Y2 327 aaPredicted RBP6.88□□□□□ -1.31
CSMD1-201ENST00000335551 PPANQ9NQ55 473 aaKnown RBP6.88□□□□□ -1.31
CSMD1-201ENST00000335551 MYL6BP14649 208 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 RPL13P26373 211 aaKnown RBP6.88□□□□□ -1.31
CSMD1-201ENST00000335551 RAP1GDS1P52306 607 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 CABP4P57796 275 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 FNBP4Q8N3X1 1017 aaPredicted RBP6.88□□□□□ -1.31
CSMD1-201ENST00000335551 IGSF22Q8N9C0 903 aa6.88□□□□□ -1.31
CSMD1-201ENST00000335551 FAM204AQ9H8W3 233 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms