RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 FRMD4BQ9Y2L6 1034 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 TACO1Q9BSH4 297 aaKnown RBP15.99■□□□□ 0.15
COL7A1-201ENST00000328333 EIF2AQ9BY44 585 aaKnown RBP15.99■□□□□ 0.15
COL7A1-201ENST00000328333 CRCPO75575 148 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 CCT2P78371 535 aaKnown RBP15.99■□□□□ 0.15
COL7A1-201ENST00000328333 B4DLN1 442 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 ERCC5P28715 1186 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-201ENST00000328333 MRPL12P52815 198 aaKnown RBP15.99■□□□□ 0.15
COL7A1-201ENST00000328333 LZTFL1Q9NQ48 299 aa15.99■□□□□ 0.15
COL7A1-201ENST00000328333 SLMAPQ14BN4 828 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 ZSCAN26Q16670 478 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 FAM169AQ9Y6X4 670 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 RPRD2Q5VT52 1461 aaKnown RBP15.98■□□□□ 0.15
COL7A1-201ENST00000328333 RTN1Q16799 776 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 RBM26Q5T8P6 1007 aaKnown RBP15.98■□□□□ 0.15
COL7A1-201ENST00000328333 RBM42Q9BTD8 480 aaKnown RBP15.98■□□□□ 0.15
COL7A1-201ENST00000328333 EEF2P13639 858 aaKnown RBP15.98■□□□□ 0.15
COL7A1-201ENST00000328333 TMTC1Q8IUR5 882 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 ANKIB1Q9P2G1 1089 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 PLCB3Q01970 1234 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 NAP1L4Q99733 375 aaKnown RBP15.98■□□□□ 0.15
COL7A1-201ENST00000328333 LDHCP07864 332 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 LMOD1P29536 600 aaPredicted RBP15.98■□□□□ 0.15
COL7A1-201ENST00000328333 GNA11P29992 359 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 RASEFQ8IZ41 740 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 RGS22Q8NE09 1264 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 DNAJC25Q9H1X3 360 aa15.98■□□□□ 0.15
COL7A1-201ENST00000328333 DEUP1Q05D60 604 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 SLC26A6Q9BXS9 759 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 APBA1Q02410 837 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 HOMER3Q9NSC5 361 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 TTC36A6NLP5 189 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 RNF40O75150 1001 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 PDCD2Q16342 344 aaPredicted RBP15.97■□□□□ 0.15
COL7A1-201ENST00000328333 GDPD2Q9HCC8 539 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 C6orf50Q9HD87 102 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 DCAF8L1A6NGE4 600 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 ITIH3Q06033 890 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 VSIG1Q86XK7 387 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 BANK1Q8NDB2 785 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 MICAL1Q8TDZ2 1067 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 CNNM4Q6P4Q7 775 aa15.97■□□□□ 0.15
COL7A1-201ENST00000328333 CRNKL1Q9BZJ0 848 aaKnown RBP15.97■□□□□ 0.15
COL7A1-201ENST00000328333 PTGS1P23219 599 aa15.96■□□□□ 0.15
COL7A1-201ENST00000328333 CCDC25Q86WR0 208 aa15.96■□□□□ 0.15
COL7A1-201ENST00000328333 FLOT1O75955 427 aa15.96■□□□□ 0.15
COL7A1-201ENST00000328333 LLPHQ9BRT6 129 aaKnown RBP15.96■□□□□ 0.15
COL7A1-201ENST00000328333 SATB1Q01826 763 aa15.96■□□□□ 0.15
COL7A1-201ENST00000328333 KLHL14Q9P2G3 628 aa15.96■□□□□ 0.15
COL7A1-201ENST00000328333 SAMM50Q9Y512 469 aa15.96■□□□□ 0.15
COL7A1-201ENST00000328333 SLC4A8Q2Y0W8 1093 aa15.96■□□□□ 0.15
COL7A1-201ENST00000328333 EFCAB13Q8IY85 973 aa15.96■□□□□ 0.15
COL7A1-201ENST00000328333 ANKRD36BQ8N2N9 1353 aa15.96■□□□□ 0.15
COL7A1-201ENST00000328333 CCDC84Q86UT8 332 aaPredicted RBP15.96■□□□□ 0.15
COL7A1-201ENST00000328333 ZC3H15Q8WU90 426 aaKnown RBP15.96■□□□□ 0.15
COL7A1-201ENST00000328333 COG7P83436 770 aa15.96■□□□□ 0.14
COL7A1-201ENST00000328333 LRRD1A4D1F6 860 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 ZNF131P52739 623 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 PRPF31Q8WWY3 499 aaKnown RBP15.95■□□□□ 0.14
COL7A1-201ENST00000328333 SYNRGQ9UMZ2 1314 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 GLT8D2Q9H1C3 349 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 IFNKQ9P0W0 207 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 RNASELQ05823 741 aaKnown RBP15.95■□□□□ 0.14
COL7A1-201ENST00000328333 SNCBQ16143 134 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 ALG1Q9BT22 464 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 TFIP11Q9UBB9 837 aaKnown RBP15.95■□□□□ 0.14
COL7A1-201ENST00000328333 ZNF445P59923 1031 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 SYT10Q6XYQ8 523 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 PPP4R1Q8TF05 950 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 NCBP1Q09161 790 aaKnown RBP15.95■□□□□ 0.14
COL7A1-201ENST00000328333 ANKRD20A3Q5VUR7 823 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 FAM71BQ8TC56 605 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 GOLGA8KD6RF30 607 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 HOXA7P31268 230 aaPredicted RBP15.95■□□□□ 0.14
COL7A1-201ENST00000328333 CCDC51Q96ER9 411 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 DNMBPQ6XZF7 1577 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 NAIPQ13075 1403 aa15.95■□□□□ 0.14
COL7A1-201ENST00000328333 FLIIQ13045 1269 aa15.94■□□□□ 0.14
COL7A1-201ENST00000328333 CDC5LQ99459 802 aaKnown RBP15.94■□□□□ 0.14
COL7A1-201ENST00000328333 IFIT1BQ5T764 474 aaKnown RBP15.94■□□□□ 0.14
COL7A1-201ENST00000328333 RPAINQ86UA6 219 aa15.94■□□□□ 0.14
COL7A1-201ENST00000328333 PNMA8AQ86V59 439 aaPredicted RBP15.94■□□□□ 0.14
COL7A1-201ENST00000328333 POGZQ7Z3K3 1410 aa15.94■□□□□ 0.14
COL7A1-201ENST00000328333 MAIP1Q8WWC4 291 aa15.94■□□□□ 0.14
COL7A1-201ENST00000328333 SOS1Q07889 1333 aaPredicted RBP15.94■□□□□ 0.14
COL7A1-201ENST00000328333 TEX13AQ9BXU3 409 aaPredicted RBP15.94■□□□□ 0.14
COL7A1-201ENST00000328333 HMGB3O15347 200 aaKnown RBP15.94■□□□□ 0.14
COL7A1-201ENST00000328333 KRT2P35908 639 aa15.94■□□□□ 0.14
COL7A1-201ENST00000328333 IGF1RP08069 1367 aa15.94■□□□□ 0.14
COL7A1-201ENST00000328333 ARHGEF12Q9NZN5 1544 aa15.94■□□□□ 0.14
COL7A1-201ENST00000328333 PLCD1P51178 756 aa15.94■□□□□ 0.14
COL7A1-201ENST00000328333 UQCRFS1P1P0C7P4 283 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 GEN1Q17RS7 908 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 LIN9Q5TKA1 542 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 GCC2Q8IWJ2 1684 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 SEPT2Q15019 361 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 DBN1Q16643 649 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 SLC12A5Q9H2X9 1139 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 CFAP70Q5T0N1 1121 aa15.93■□□□□ 0.14
COL7A1-201ENST00000328333 UTP14CQ5TAP6 766 aaKnown RBP15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms