RNA–Protein interactions for RNA: ENST00000328159.8

TPM3-205, Transcript of tropomyosin 3, humanhuman

TSL 2 BASIC

Gene TPM3, Length 1,771 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-205ENST00000328159 MTMR6Q9Y217 621 aa17.66■□□□□ 0.42
TPM3-205ENST00000328159 DDX49Q9Y6V7 483 aaKnown RBP17.66■□□□□ 0.42
TPM3-205ENST00000328159 POLRMTO00411 1230 aaKnown RBP17.65■□□□□ 0.42
TPM3-205ENST00000328159 F13A1P00488 732 aa17.65■□□□□ 0.42
TPM3-205ENST00000328159 PDIA4P13667 645 aaKnown RBP17.65■□□□□ 0.42
TPM3-205ENST00000328159 IFNL3Q8IZI9 196 aa17.65■□□□□ 0.42
TPM3-205ENST00000328159 LCORLQ8N3X6 602 aa17.65■□□□□ 0.42
TPM3-205ENST00000328159 AKT1S1Q96B36 256 aa17.65■□□□□ 0.42
TPM3-205ENST00000328159 EPB41L4AQ9HCS5 686 aaPredicted RBP17.65■□□□□ 0.42
TPM3-205ENST00000328159 WDR19Q8NEZ3 1342 aa17.65■□□□□ 0.42
TPM3-205ENST00000328159 IRS2Q9Y4H2 1338 aa17.65■□□□□ 0.42
TPM3-205ENST00000328159 CHD4Q14839 1912 aa17.65■□□□□ 0.42
TPM3-205ENST00000328159 PRC1O43663 620 aa17.64■□□□□ 0.41
TPM3-205ENST00000328159 PDCP20941 246 aa17.64■□□□□ 0.41
TPM3-205ENST00000328159 LARP1BQ659C4 914 aaKnown RBP17.64■□□□□ 0.41
TPM3-205ENST00000328159 TBC1D10CQ8IV04 446 aa17.64■□□□□ 0.41
TPM3-205ENST00000328159 RBM17Q96I25 401 aaKnown RBP17.64■□□□□ 0.41
TPM3-205ENST00000328159 LEMD3Q9Y2U8 911 aa17.64■□□□□ 0.41
TPM3-205ENST00000328159 TCHHQ07283 1943 aa17.64■□□□□ 0.41
TPM3-205ENST00000328159 GSG1L2A8MUP6 293 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 ZBTB22O15209 634 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 SCRN1Q12765 414 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 TRDNQ13061 729 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 MIGA1Q8NAN2 632 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 ZNF274Q96GC6 653 aaPredicted RBP17.63■□□□□ 0.41
TPM3-205ENST00000328159 NAPBQ9H115 298 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 ANKIB1Q9P2G1 1089 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 SLC4A4Q9Y6R1 1079 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 XDHP47989 1333 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 PRKAB2O43741 272 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 EVCP57679 992 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 ANTXR2P58335 489 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 ADGRA1Q86SQ6 560 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 TXNRD3Q86VQ6 643 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 LLPHQ9BRT6 129 aaKnown RBP17.63■□□□□ 0.41
TPM3-205ENST00000328159 NACAP1Q9BZK3 213 aa17.63■□□□□ 0.41
TPM3-205ENST00000328159 TNS1Q9HBL0 1735 aaKnown RBP17.63■□□□□ 0.41
TPM3-205ENST00000328159 EP400Q96L91 3159 aa17.62■□□□□ 0.41
TPM3-205ENST00000328159 TIAM2Q8IVF5 1701 aa17.62■□□□□ 0.41
TPM3-205ENST00000328159 MAGEB6P1A0A0J9YX57 407 aa17.62■□□□□ 0.41
TPM3-205ENST00000328159 VPS37CA5D8V6 355 aaPredicted RBP17.62■□□□□ 0.41
TPM3-205ENST00000328159 JAK2O60674 1132 aa17.62■□□□□ 0.41
TPM3-205ENST00000328159 PDIA3P30101 505 aaKnown RBP17.62■□□□□ 0.41
TPM3-205ENST00000328159 FOXD4L6Q3SYB3 417 aaPredicted RBP17.62■□□□□ 0.41
TPM3-205ENST00000328159 FOXD4L3Q6VB84 417 aaPredicted RBP17.62■□□□□ 0.41
TPM3-205ENST00000328159 COL23A1Q86Y22 540 aaPredicted RBP17.62■□□□□ 0.41
TPM3-205ENST00000328159 ATP6V1DQ9Y5K8 247 aa17.62■□□□□ 0.41
TPM3-205ENST00000328159 SLC51AQ86UW1 340 aa17.61■□□□□ 0.41
TPM3-205ENST00000328159 SMARCC2Q8TAQ2 1214 aa17.61■□□□□ 0.41
TPM3-205ENST00000328159 GPHNQ9NQX3 736 aaPredicted RBP17.61■□□□□ 0.41
TPM3-205ENST00000328159 MAST2Q6P0Q8 1798 aa17.61■□□□□ 0.41
TPM3-205ENST00000328159 HOXA10P31260 410 aaPredicted RBP17.61■□□□□ 0.41
TPM3-205ENST00000328159 NAA16Q6N069 864 aaPredicted RBP17.61■□□□□ 0.41
TPM3-205ENST00000328159 NLGN1Q8N2Q7 840 aa17.61■□□□□ 0.41
TPM3-205ENST00000328159 FLAD1Q8NFF5 587 aa17.61■□□□□ 0.41
TPM3-205ENST00000328159 CHMP4CQ96CF2 233 aa17.61■□□□□ 0.41
TPM3-205ENST00000328159 NAP1L2Q9ULW6 460 aaPredicted RBP17.61■□□□□ 0.41
TPM3-205ENST00000328159 CCDC88AQ3V6T2 1871 aa17.6■□□□□ 0.41
TPM3-205ENST00000328159 NRXN2Q9P2S2 1712 aa17.6■□□□□ 0.41
TPM3-205ENST00000328159 RGPD3A6NKT7 1758 aaPredicted RBP17.6■□□□□ 0.41
TPM3-205ENST00000328159 RGPD4Q7Z3J3 1758 aa17.6■□□□□ 0.41
TPM3-205ENST00000328159 ANKRD31Q8N7Z5 1873 aa17.6■□□□□ 0.41
TPM3-205ENST00000328159 KLRG2A4D1S0 409 aaPredicted RBP17.6■□□□□ 0.41
TPM3-205ENST00000328159 TDO2P48775 406 aa17.6■□□□□ 0.41
TPM3-205ENST00000328159 GPSM2P81274 684 aa17.6■□□□□ 0.41
TPM3-205ENST00000328159 CHAF1AQ13111 956 aaPredicted RBP17.6■□□□□ 0.41
TPM3-205ENST00000328159 C15orf52Q6ZUT6 534 aaKnown RBP17.6■□□□□ 0.41
TPM3-205ENST00000328159 ZNF384Q8TF68 577 aa17.6■□□□□ 0.41
TPM3-205ENST00000328159 CRAMP1Q96RY5 1269 aa17.6■□□□□ 0.41
TPM3-205ENST00000328159 BBOX1O75936 387 aa17.59■□□□□ 0.41
TPM3-205ENST00000328159 NCLP19338 710 aaKnown RBP17.59■□□□□ 0.41
TPM3-205ENST00000328159 CCT2P78371 535 aaKnown RBP17.59■□□□□ 0.41
TPM3-205ENST00000328159 CYB5R4Q7L1T6 521 aa17.59■□□□□ 0.41
TPM3-205ENST00000328159 NSUN7Q8NE18 718 aaKnown RBP17.59■□□□□ 0.41
TPM3-205ENST00000328159 GPT2Q8TD30 523 aa17.59■□□□□ 0.41
TPM3-205ENST00000328159 NSUN4Q96CB9 384 aaKnown RBP17.59■□□□□ 0.41
TPM3-205ENST00000328159 RIOK1Q9BRS2 568 aaKnown RBP17.59■□□□□ 0.41
TPM3-205ENST00000328159 CTDNEP1O95476 244 aa17.58■□□□□ 0.41
TPM3-205ENST00000328159 NEDD4P46934 1319 aa17.58■□□□□ 0.41
TPM3-205ENST00000328159 CTDSPL2Q05D32 466 aa17.58■□□□□ 0.41
TPM3-205ENST00000328159 CDC37L1Q7L3B6 337 aa17.58■□□□□ 0.41
TPM3-205ENST00000328159 TMEM87AQ8NBN3 555 aa17.58■□□□□ 0.41
TPM3-205ENST00000328159 BRPF3Q9ULD4 1205 aa17.58■□□□□ 0.41
TPM3-205ENST00000328159 KLF18A0A0U1RQI7 1052 aa17.58■□□□□ 0.4
TPM3-205ENST00000328159 B4E1Z4 1266 aa17.58■□□□□ 0.4
TPM3-205ENST00000328159 ATP2B4P23634 1241 aa17.58■□□□□ 0.4
TPM3-205ENST00000328159 MECOMQ03112 1051 aa17.58■□□□□ 0.4
TPM3-205ENST00000328159 ZNF804AQ7Z570 1209 aa17.58■□□□□ 0.4
TPM3-205ENST00000328159 NKX2-3Q8TAU0 364 aa17.58■□□□□ 0.4
TPM3-205ENST00000328159 DDX11Q96FC9 970 aa17.58■□□□□ 0.4
TPM3-205ENST00000328159 NCOA5Q9HCD5 579 aaKnown RBP17.58■□□□□ 0.4
TPM3-205ENST00000328159 CNPY2Q9Y2B0 182 aa17.58■□□□□ 0.4
TPM3-205ENST00000328159 LRRC37AA6NMS7 1700 aa17.57■□□□□ 0.4
TPM3-205ENST00000328159 FSD2A1L4K1 749 aa17.57■□□□□ 0.4
TPM3-205ENST00000328159 PTPDC1A2A3K4 754 aa17.57■□□□□ 0.4
TPM3-205ENST00000328159 MBD3O95983 291 aa17.57■□□□□ 0.4
TPM3-205ENST00000328159 DYNLL1P63167 89 aaKnown RBP17.57■□□□□ 0.4
TPM3-205ENST00000328159 HMGN5P82970 282 aaKnown RBP17.57■□□□□ 0.4
TPM3-205ENST00000328159 AKNAD1Q5T1N1 836 aa17.57■□□□□ 0.4
TPM3-205ENST00000328159 TMED8Q6PL24 325 aaPredicted RBP17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms