RNA–Protein interactions for RNA: ENST00000296215.7

SNIP1-201, Transcript of Smad nuclear interacting protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNIP1, Length 4,605 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNIP1-201ENST00000296215 ANKRD1Q15327 319 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 SRGAP1Q7Z6B7 1085 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 SNRNP27Q8WVK2 155 aaKnown RBP13.19□□□□□ -0.3
SNIP1-201ENST00000296215 NSFL1CQ9UNZ2 370 aaKnown RBP13.19□□□□□ -0.3
SNIP1-201ENST00000296215 NCOA1Q15788 1441 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 NSMCE1Q8WV22 266 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 PALMDQ9NP74 551 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 USO1O60763 962 aaKnown RBP13.19□□□□□ -0.3
SNIP1-201ENST00000296215 FCHSD2O94868 740 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 TCP11L2Q8N4U5 519 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 TEX13AQ9BXU3 409 aaPredicted RBP13.19□□□□□ -0.3
SNIP1-201ENST00000296215 SH2B1Q9NRF2 756 aaPredicted RBP13.19□□□□□ -0.3
SNIP1-201ENST00000296215 LSM1O15116 133 aaKnown RBP13.19□□□□□ -0.3
SNIP1-201ENST00000296215 EXOSC9Q06265 439 aaKnown RBP13.19□□□□□ -0.3
SNIP1-201ENST00000296215 SPA17Q15506 151 aa13.19□□□□□ -0.3
SNIP1-201ENST00000296215 LARP6Q9BRS8 491 aaKnown RBP13.19□□□□□ -0.3
SNIP1-201ENST00000296215 GPR101Q96P66 508 aaPredicted RBP13.18□□□□□ -0.3
SNIP1-201ENST00000296215 ARIH1Q9Y4X5 557 aaPredicted RBP13.18□□□□□ -0.3
SNIP1-201ENST00000296215 NCAPD3P42695 1498 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 SCAPERQ9BY12 1400 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 ANKRD62A6NC57 917 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 MYO1BO43795 1136 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 USP4Q13107 963 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 LRRC31Q6UY01 552 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 TMEM110Q86TL2 294 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 NUP88Q99567 741 aaPredicted RBP13.18□□□□□ -0.3
SNIP1-201ENST00000296215 RABL2BQ9UNT1 228 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 ARHGAP18Q8N392 663 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 IFT81Q8WYA0 676 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 KCNF1Q9H3M0 494 aa13.18□□□□□ -0.3
SNIP1-201ENST00000296215 PREPLQ4J6C6 727 aaPredicted RBP13.17□□□□□ -0.3
SNIP1-201ENST00000296215 ATP6V0A4Q9HBG4 840 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 CWC25Q9NXE8 425 aaPredicted RBP13.17□□□□□ -0.3
SNIP1-201ENST00000296215 ITGB1BP2Q9UKP3 347 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 YEATS4O95619 227 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 PYGLP06737 847 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 VIL1P09327 827 aaKnown RBP13.17□□□□□ -0.3
SNIP1-201ENST00000296215 INAQ16352 499 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 INTS8Q75QN2 995 aaKnown RBP13.17□□□□□ -0.3
SNIP1-201ENST00000296215 ZNF280CQ8ND82 737 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 SUPT3HO75486 399 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 H2AFXP16104 143 aaPredicted RBP13.17□□□□□ -0.3
SNIP1-201ENST00000296215 HSP90AA5PQ58FG0 334 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 IQUBQ8NA54 791 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 CEP70Q8NHQ1 597 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 ZKSCAN4Q969J2 545 aaPredicted RBP13.17□□□□□ -0.3
SNIP1-201ENST00000296215 NR1H4Q96RI1 486 aaPredicted RBP13.17□□□□□ -0.3
SNIP1-201ENST00000296215 EPC1Q9H2F5 836 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 GIGYF1O75420 1035 aaPredicted RBP13.17□□□□□ -0.3
SNIP1-201ENST00000296215 SKIP12755 728 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 DNA2P51530 1060 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 JAKMIP2Q96AA8 810 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 IL17RAQ96F46 866 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 MIS18AQ9NYP9 233 aa13.17□□□□□ -0.3
SNIP1-201ENST00000296215 BZW2Q9Y6E2 419 aaKnown RBP13.17□□□□□ -0.3
SNIP1-201ENST00000296215 NPC1L1Q9UHC9 1359 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 SMAPO00193 183 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 DIAPH2O60879 1101 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 MAP4K4O95819 1239 aaPredicted RBP13.16□□□□□ -0.3
SNIP1-201ENST00000296215 ZNF131P52739 623 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 ATP11CQ8NB49 1132 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.16□□□□□ -0.3
SNIP1-201ENST00000296215 AHCYL1O43865 530 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 TBC1D1Q86TI0 1168 aaPredicted RBP13.16□□□□□ -0.3
SNIP1-201ENST00000296215 LRRC43Q8N309 656 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 IGSF22Q8N9C0 903 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 SMC1BQ8NDV3 1235 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 RAB3IPQ96QF0 476 aaPredicted RBP13.16□□□□□ -0.3
SNIP1-201ENST00000296215 FTOQ9C0B1 505 aaKnown RBP eCLIP13.16□□□□□ -0.3
SNIP1-201ENST00000296215 NDEL1Q9GZM8 345 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 IQSEC3Q9UPP2 1182 aaPredicted RBP13.16□□□□□ -0.3
SNIP1-201ENST00000296215 CCDC189A1A4V9 331 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 HGSO14964 777 aaPredicted RBP13.16□□□□□ -0.3
SNIP1-201ENST00000296215 KRT38O76015 456 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 ROR2Q01974 943 aaKnown RBP13.16□□□□□ -0.3
SNIP1-201ENST00000296215 CENPKQ9BS16 269 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 GNAT2P19087 354 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 VSIG1Q86XK7 387 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 TEKT1Q969V4 418 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 ZC4H2Q9NQZ6 224 aa13.16□□□□□ -0.3
SNIP1-201ENST00000296215 MAGEC2Q9UBF1 373 aaPredicted RBP13.16□□□□□ -0.3
SNIP1-201ENST00000296215 ATAD2Q6PL18 1390 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 FKBP15Q5T1M5 1219 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 KCTD16Q68DU8 428 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 GUCA1BQ9UMX6 200 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 TRPC6Q9Y210 931 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 PDS5BQ9NTI5 1447 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 EXOC5O00471 708 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 EVI5O60447 810 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 KIAA0753Q2KHM9 967 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 CDK5RAP3Q96JB5 506 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 SLC40A1Q9NP59 571 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 TUBA8Q9NY65 449 aaPredicted RBP13.15□□□□□ -0.3
SNIP1-201ENST00000296215 RASAL2Q9UJF2 1139 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 PPP1R9AQ9ULJ8 1098 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 LCA5Q86VQ0 697 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 HIC2Q96JB3 615 aa13.15□□□□□ -0.3
SNIP1-201ENST00000296215 PPP1R1BQ9UD71 204 aaPredicted RBP13.15□□□□□ -0.3
SNIP1-201ENST00000296215 FAM200BP0CF97 657 aa13.14□□□□□ -0.31
SNIP1-201ENST00000296215 PDCLQ13371 301 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms