RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 COL4A1P02462 1669 aa28.09■■■□□ 2.09
TRIM54-201ENST00000296098 CHRNDQ07001 517 aa28.08■■■□□ 2.09
TRIM54-201ENST00000296098 ALX1Q15699 326 aa28.08■■■□□ 2.09
TRIM54-201ENST00000296098 CDC5LQ99459 802 aaKnown RBP28.08■■■□□ 2.09
TRIM54-201ENST00000296098 CLSTN2Q9H4D0 955 aa28.08■■■□□ 2.09
TRIM54-201ENST00000296098 USP25Q9UHP3 1055 aa28.08■■■□□ 2.09
TRIM54-201ENST00000296098 ZNF396Q96N95 335 aaPredicted RBP28.08■■■□□ 2.08
TRIM54-201ENST00000296098 TIAM2Q8IVF5 1701 aa28.07■■■□□ 2.08
TRIM54-201ENST00000296098 CHD4Q14839 1912 aa28.07■■■□□ 2.08
TRIM54-201ENST00000296098 MBD4O95243 580 aa28.07■■■□□ 2.08
TRIM54-201ENST00000296098 GUCY1B3Q02153 619 aa28.07■■■□□ 2.08
TRIM54-201ENST00000296098 CAMK4Q16566 473 aa28.07■■■□□ 2.08
TRIM54-201ENST00000296098 BCAMP50895 628 aa28.06■■■□□ 2.08
TRIM54-201ENST00000296098 ANGEL1Q9UNK9 670 aaKnown RBP28.06■■■□□ 2.08
TRIM54-201ENST00000296098 CPLX1O14810 134 aa28.06■■■□□ 2.08
TRIM54-201ENST00000296098 RCOR1Q9UKL0 485 aa28.06■■■□□ 2.08
TRIM54-201ENST00000296098 CEBPZQ03701 1054 aaKnown RBP28.05■■■□□ 2.08
TRIM54-201ENST00000296098 VPS72Q15906 364 aa28.05■■■□□ 2.08
TRIM54-201ENST00000296098 CYB5R4Q7L1T6 521 aa28.05■■■□□ 2.08
TRIM54-201ENST00000296098 ZKSCAN5Q9Y2L8 839 aa28.05■■■□□ 2.08
TRIM54-201ENST00000296098 CNTNAP4Q9C0A0 1308 aa28.05■■■□□ 2.08
TRIM54-201ENST00000296098 PATL2C9JE40 543 aaKnown RBP28.04■■■□□ 2.08
TRIM54-201ENST00000296098 SH2B2O14492 632 aaPredicted RBP28.04■■■□□ 2.08
TRIM54-201ENST00000296098 NR1I2O75469 434 aa28.04■■■□□ 2.08
TRIM54-201ENST00000296098 PTMAP06454 111 aaKnown RBP28.04■■■□□ 2.08
TRIM54-201ENST00000296098 RBM43Q6ZSC3 357 aaKnown RBP28.04■■■□□ 2.08
TRIM54-201ENST00000296098 EPB41L4AQ9HCS5 686 aaPredicted RBP28.04■■■□□ 2.08
TRIM54-201ENST00000296098 DENND2AQ9ULE3 1009 aa28.04■■■□□ 2.08
TRIM54-201ENST00000296098 NEDD4P46934 1319 aa28.04■■■□□ 2.08
TRIM54-201ENST00000296098 ERFEQ4G0M1 354 aa28.04■■■□□ 2.08
TRIM54-201ENST00000296098 ILDR1Q86SU0 546 aaPredicted RBP28.04■■■□□ 2.08
TRIM54-201ENST00000296098 USP28Q96RU2 1077 aa28.04■■■□□ 2.08
TRIM54-201ENST00000296098 NAPBQ9H115 298 aa28.04■■■□□ 2.08
TRIM54-201ENST00000296098 EIF2AK3Q9NZJ5 1116 aaKnown RBP28.04■■■□□ 2.08
TRIM54-201ENST00000296098 ORC3Q9UBD5 711 aaPredicted RBP28.04■■■□□ 2.08
TRIM54-201ENST00000296098 B4E1Z4 1266 aa28.03■■■□□ 2.08
TRIM54-201ENST00000296098 TYRO3Q06418 890 aa28.03■■■□□ 2.08
TRIM54-201ENST00000296098 RAB11FIP4Q86YS3 637 aa28.03■■■□□ 2.08
TRIM54-201ENST00000296098 C8orf76Q96K31 380 aa28.03■■■□□ 2.08
TRIM54-201ENST00000296098 FTOQ9C0B1 505 aaKnown RBP eCLIP28.03■■■□□ 2.08
TRIM54-201ENST00000296098 ARMT1Q9H993 441 aa28.03■■■□□ 2.08
TRIM54-201ENST00000296098 KDM4AO75164 1064 aa28.02■■■□□ 2.08
TRIM54-201ENST00000296098 IFNL3Q8IZI9 196 aa28.02■■■□□ 2.08
TRIM54-201ENST00000296098 C8orf37Q96NL8 207 aa28.02■■■□□ 2.08
TRIM54-201ENST00000296098 ADCY5O95622 1261 aa28.02■■■□□ 2.08
TRIM54-201ENST00000296098 ANKRD18AQ8IVF6 992 aa28.02■■■□□ 2.08
TRIM54-201ENST00000296098 TMEM87BQ96K49 555 aa28.02■■■□□ 2.08
TRIM54-201ENST00000296098 RGL2O15211 777 aa28.01■■■□□ 2.07
TRIM54-201ENST00000296098 CKAP2LQ8IYA6 745 aa28.01■■■□□ 2.07
TRIM54-201ENST00000296098 MRVI1Q9Y6F6 885 aa28.01■■■□□ 2.07
TRIM54-201ENST00000296098 GNAT2P19087 354 aa28.01■■■□□ 2.07
TRIM54-201ENST00000296098 SF3B3Q15393 1217 aaKnown RBP28.01■■■□□ 2.07
TRIM54-201ENST00000296098 NKX2-3Q8TAU0 364 aa28.01■■■□□ 2.07
TRIM54-201ENST00000296098 FAM200AQ8TCP9 573 aa28.01■■■□□ 2.07
TRIM54-201ENST00000296098 NGLY1Q96IV0 654 aa28.01■■■□□ 2.07
TRIM54-201ENST00000296098 PNPLA7Q6ZV29 1317 aa28■■■□□ 2.07
TRIM54-201ENST00000296098 C3orf67Q6ZVT6 689 aa28■■■□□ 2.07
TRIM54-201ENST00000296098 METAP2P50579 478 aaKnown RBP eCLIP27.99■■■□□ 2.07
TRIM54-201ENST00000296098 FBXO18Q8NFZ0 1043 aa27.99■■■□□ 2.07
TRIM54-201ENST00000296098 ZNF804BA4D1E1 1349 aa27.99■■■□□ 2.07
TRIM54-201ENST00000296098 BTAF1O14981 1849 aa27.99■■■□□ 2.07
TRIM54-201ENST00000296098 ZNF500O60304 480 aaPredicted RBP27.99■■■□□ 2.07
TRIM54-201ENST00000296098 KCNQ4P56696 695 aa27.99■■■□□ 2.07
TRIM54-201ENST00000296098 APOA5Q6Q788 366 aa27.99■■■□□ 2.07
TRIM54-201ENST00000296098 LRP2BPQ9P2M1 347 aa27.99■■■□□ 2.07
TRIM54-201ENST00000296098 GSG1L2A8MUP6 293 aa27.98■■■□□ 2.07
TRIM54-201ENST00000296098 OTUD7BQ6GQQ9 843 aa27.98■■■□□ 2.07
TRIM54-201ENST00000296098 LCORLQ8N3X6 602 aa27.98■■■□□ 2.07
TRIM54-201ENST00000296098 NACAP1Q9BZK3 213 aa27.98■■■□□ 2.07
TRIM54-201ENST00000296098 CNNM2Q9H8M5 875 aa27.98■■■□□ 2.07
TRIM54-201ENST00000296098 COL24A1Q17RW2 1714 aa27.98■■■□□ 2.07
TRIM54-201ENST00000296098 CDKL5O76039 1030 aa27.97■■■□□ 2.07
TRIM54-201ENST00000296098 CCAR1Q8IX12 1150 aaKnown RBP27.97■■■□□ 2.07
TRIM54-201ENST00000296098 TAF1P21675 1872 aa27.97■■■□□ 2.07
TRIM54-201ENST00000296098 NHSQ6T4R5 1651 aa27.97■■■□□ 2.07
TRIM54-201ENST00000296098 CTDSPL2Q05D32 466 aa27.97■■■□□ 2.07
TRIM54-201ENST00000296098 RGS22Q8NE09 1264 aa27.97■■■□□ 2.07
TRIM54-201ENST00000296098 BSDC1Q9NW68 430 aaPredicted RBP27.97■■■□□ 2.07
TRIM54-201ENST00000296098 ECM29Q5VYK3 1845 aa27.97■■■□□ 2.07
TRIM54-201ENST00000296098 BICDL1Q6ZP65 573 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 BRAPQ7Z569 592 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 IGDCC4Q8TDY8 1250 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 NAP1L5Q96NT1 182 aaPredicted RBP27.96■■■□□ 2.07
TRIM54-201ENST00000296098 GNL3LQ9NVN8 582 aaKnown RBP27.96■■■□□ 2.07
TRIM54-201ENST00000296098 RTEL1Q9NZ71 1219 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 SLC4A4Q9Y6R1 1079 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 TDO2P48775 406 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 UBE4AQ14139 1066 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 TMEM67Q5HYA8 995 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 AKNAD1Q5T1N1 836 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 TBC1D9BQ66K14 1250 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 CCDC73Q6ZRK6 1079 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 LY9Q9HBG7 655 aa27.96■■■□□ 2.07
TRIM54-201ENST00000296098 PRKAB2O43741 272 aa27.95■■■□□ 2.06
TRIM54-201ENST00000296098 ME1P48163 572 aa27.95■■■□□ 2.06
TRIM54-201ENST00000296098 CPLX2Q6PUV4 134 aaKnown RBP27.95■■■□□ 2.06
TRIM54-201ENST00000296098 SASS6Q6UVJ0 657 aa27.95■■■□□ 2.06
TRIM54-201ENST00000296098 NFXL1Q6ZNB6 911 aa27.95■■■□□ 2.06
TRIM54-201ENST00000296098 SGMS1Q86VZ5 419 aa27.95■■■□□ 2.06
TRIM54-201ENST00000296098 KRT23Q9C075 422 aa27.95■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 98.4 ms