RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 SLMAPQ14BN4 828 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 FAM133BQ5BKY9 247 aaKnown RBP13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 FERMT1Q9BQL6 677 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 CENPKQ9BS16 269 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 MED4Q9NPJ6 270 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 ATP6V0A2Q9Y487 856 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 CHMP2AO43633 222 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 PPM1FP49593 454 aaPredicted RBP13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 FGD6Q6ZV73 1430 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 CATIPQ7Z7H3 387 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 NLRP2Q9NX02 1062 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 HAUS1Q96CS2 278 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 FAM212AQ96EL1 285 aa13.16□□□□□ -0.3
SHROOM3-201ENST00000296043 TMEM67Q5HYA8 995 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 RPAP2Q8IXW5 612 aaPredicted RBP13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 SPDL1Q96EA4 605 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 MPHOSPH8Q99549 860 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 ANLNQ9NQW6 1124 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 GOLGA8KD6RF30 607 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 CALR3Q96L12 384 aaKnown RBP13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 SDSP20132 328 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 PPP1R21Q6ZMI0 780 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 PIP4K2CQ8TBX8 421 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 PYM1Q9BRP8 204 aaKnown RBP13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 RGS16O15492 202 aaPredicted RBP13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 SEPT8Q92599 483 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 TNIP1Q15025 636 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 ZFXP17010 805 aaPredicted RBP13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 ZNF711Q9Y462 761 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 FNBP4Q8N3X1 1017 aaPredicted RBP13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 STAC3Q96MF2 364 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 TXNDC16Q9P2K2 825 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 INTUQ9ULD6 942 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 SLC4A7Q9Y6M7 1214 aa13.15□□□□□ -0.3
SHROOM3-201ENST00000296043 DYTNA2CJ06 578 aa13.15□□□□□ -0.31
SHROOM3-201ENST00000296043 GNPTABQ3T906 1256 aa13.15□□□□□ -0.31
SHROOM3-201ENST00000296043 SULT6B1Q6IMI4 303 aa13.15□□□□□ -0.31
SHROOM3-201ENST00000296043 CYP26C1Q6V0L0 522 aa13.15□□□□□ -0.31
SHROOM3-201ENST00000296043 TBCAO75347 108 aaKnown RBP13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 CFAP61Q8NHU2 1237 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 PSMA7O14818 248 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 KRT10P13645 584 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 SPTLC2O15270 562 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 ZNF445P59923 1031 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 BRF1Q92994 677 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 A0A087WUV0 522 aaPredicted RBP13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 NOX5Q96PH1 765 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 ATAD2Q6PL18 1390 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 KIF21BO75037 1637 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 DESI2Q9BSY9 194 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 KLHL14Q9P2G3 628 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 FANCCQ00597 558 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 DDX41Q9UJV9 622 aaKnown RBP13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 TRPA1O75762 1119 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 APOEP02649 317 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 PDHA1P08559 390 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 PSME1Q06323 249 aa13.14□□□□□ -0.31
SHROOM3-201ENST00000296043 GJC2Q5T442 439 aaPredicted RBP13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 EFCAB2Q5VUJ9 269 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 TRMT1LQ7Z2T5 733 aaKnown RBP13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 ATP2A3Q93084 1043 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 BICC1Q9H694 974 aaKnown RBP13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 FAN1Q9Y2M0 1017 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 EIF4E1BA6NMX2 242 aaKnown RBP13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 MTX1Q13505 466 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 GEN1Q17RS7 908 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 C16orf87Q6PH81 154 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 APOBRQ0VD83 1088 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 SAAL1Q96ER3 474 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 TTF2Q9UNY4 1162 aaKnown RBP13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 DYDC2Q96IM9 177 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 TMPOP42166 694 aaKnown RBP13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 RAPGEF4Q8WZA2 1011 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 SH3GL3Q99963 347 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 CEP126Q9P2H0 1117 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 CCDC8Q9H0W5 538 aaPredicted RBP13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 MYO1CO00159 1063 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 PDZD8Q8NEN9 1154 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 RILPQ96NA2 401 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 GADD45BO75293 160 aaPredicted RBP13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 IARSP41252 1262 aaKnown RBP13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 SATB2Q9UPW6 733 aa13.13□□□□□ -0.31
SHROOM3-201ENST00000296043 DNAJC8O75937 253 aaPredicted RBP13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 STX2P32856 288 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 MTMR3Q13615 1198 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 TRIM6Q9C030 488 aaPredicted RBP13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 HNRNPH2P55795 449 aaKnown RBP13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 RAD51AP2Q09MP3 1159 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 HSP90AA5PQ58FG0 334 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 SYNRGQ9UMZ2 1314 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 PPP4R3AQ6IN85 833 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 CNGA1P29973 690 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 CCT6BQ92526 530 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 RNF40O75150 1001 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 KCTD16Q68DU8 428 aa13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 ECM2O94769 699 aaPredicted RBP13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 AEBP2Q6ZN18 517 aaPredicted RBP13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 ZC3H18Q86VM9 953 aaKnown RBP13.12□□□□□ -0.31
SHROOM3-201ENST00000296043 HINFPQ9BQA5 517 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms