RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 SYT10Q6XYQ8 523 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 ARMT1Q9H993 441 aa12.97□□□□□ -0.33
USP53-201ENST00000274030 TRAF1Q13077 416 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 HS2ST1Q7LGA3 356 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 SMC5Q8IY18 1101 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 IQCGQ9H095 443 aaKnown RBP12.96□□□□□ -0.33
USP53-201ENST00000274030 ZKSCAN5Q9Y2L8 839 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 PARP3Q9Y6F1 533 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 BACH1O14867 736 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 OTUD7BQ6GQQ9 843 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 GIGYF2Q6Y7W6 1299 aaKnown RBP12.96□□□□□ -0.33
USP53-201ENST00000274030 IFT81Q8WYA0 676 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 A0A1W2PP64 1363 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 PRAG1Q86YV5 1406 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 KRT86O43790 486 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 OTUD6BQ8N6M0 293 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 FBF1Q8TES7 1133 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 PUS7Q96PZ0 661 aaKnown RBP12.96□□□□□ -0.33
USP53-201ENST00000274030 RSPH14Q9UHP6 348 aa12.96□□□□□ -0.33
USP53-201ENST00000274030 NPATQ14207 1427 aa12.96□□□□□ -0.34
USP53-201ENST00000274030 ZBTB7BO15156 539 aaPredicted RBP12.96□□□□□ -0.34
USP53-201ENST00000274030 HARSP12081 509 aaKnown RBP12.96□□□□□ -0.34
USP53-201ENST00000274030 ITGA6P23229 1130 aa12.96□□□□□ -0.34
USP53-201ENST00000274030 GNA11P29992 359 aa12.96□□□□□ -0.34
USP53-201ENST00000274030 KRT222Q8N1A0 295 aa12.96□□□□□ -0.34
USP53-201ENST00000274030 FCHSD1Q86WN1 690 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 DDX21Q9NR30 783 aaKnown RBP eCLIP12.95□□□□□ -0.342e-8■■■■□ 24.8
USP53-201ENST00000274030 WDR7Q9Y4E6 1490 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 GPIHBP1Q8IV16 184 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 JDP2Q8WYK2 163 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 TLDC2A0PJX2 215 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 CHMP2AO43633 222 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 TAF5LO75529 589 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 IQUBQ8NA54 791 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 FAM227BQ96M60 508 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 C19orf44Q9H6X5 657 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 PLCG2P16885 1265 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 KRT83P78385 493 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 CCDC25Q86WR0 208 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 TEX11Q8IYF3 940 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 SLU7O95391 586 aaKnown RBP12.95□□□□□ -0.34
USP53-201ENST00000274030 PARP1P09874 1014 aaKnown RBP12.95□□□□□ -0.34
USP53-201ENST00000274030 MAP3K9P80192 1104 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 LGR6Q9HBX8 967 aa12.95□□□□□ -0.34
USP53-201ENST00000274030 ZYXQ15942 572 aaKnown RBP12.94□□□□□ -0.34
USP53-201ENST00000274030 PABPN1LA6NDY0 278 aaKnown RBP12.94□□□□□ -0.34
USP53-201ENST00000274030 A1BGP04217 495 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 FERP16591 822 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 ERCC3P19447 782 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 LUC7L2Q9Y383 392 aaKnown RBP12.94□□□□□ -0.34
USP53-201ENST00000274030 IGSF3O75054 1194 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 MXRA7P84157 204 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 ZNF790Q6PG37 636 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 BRAPQ7Z569 592 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 MYL10Q9BUA6 226 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 URB2Q14146 1524 aaKnown RBP12.94□□□□□ -0.34
USP53-201ENST00000274030 BICDL2A1A5D9 508 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 CCDC63Q8NA47 563 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 SELENOSQ9BQE4 189 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 A2MP01023 1474 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 IP6K1Q92551 441 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 RASAL2Q9UJF2 1139 aa12.94□□□□□ -0.34
USP53-201ENST00000274030 TRAF5O00463 557 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 UFL1O94874 794 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 TNNI3KQ59H18 835 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 VPS16Q9H269 839 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 FPGT-TNNI3KV9GXZ4 949 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 EYA2O00167 538 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 PIK3AP1Q6ZUJ8 805 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 ANKRD2Q9GZV1 360 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 V9GY48 417 aaPredicted RBP12.93□□□□□ -0.34
USP53-201ENST00000274030 GOLGA1Q92805 767 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 GPATCH11Q8N954 259 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 CTNND2Q9UQB3 1225 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 ATP6V0A2Q9Y487 856 aa12.93□□□□□ -0.34
USP53-201ENST00000274030 SLC27A2O14975 620 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 CLCN1P35523 988 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 TRAPPC3LQ5T215 181 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 XAGE2Q96GT9 111 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 GJA3Q9Y6H8 435 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 LAMC3Q9Y6N6 1575 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 ZEB2O60315 1214 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 KIF4AO95239 1232 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 RPS6KB1P23443 525 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 PLCD3Q8N3E9 789 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 RNASE9P60153 205 aaKnown RBP12.92□□□□□ -0.34
USP53-201ENST00000274030 SSX2IPQ9Y2D8 614 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 ATP10BO94823 1461 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 SYCP2Q9BX26 1530 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 PCDH11XQ9BZA7 1347 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 PCDH11YQ9BZA8 1340 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 ABCC1P33527 1531 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 MNAT1P51948 309 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 CNBD1Q8NA66 436 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 LMBR1Q8WVP7 490 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 INTS4Q96HW7 963 aaKnown RBP12.92□□□□□ -0.34
USP53-201ENST00000274030 ORAI2Q96SN7 254 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 HELLSQ9NRZ9 838 aa12.92□□□□□ -0.34
USP53-201ENST00000274030 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.92□□□□□ -0.34
USP53-201ENST00000274030 hCG_1642624A0A1W2PR95 340 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms