RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 LRRC2Q9BYS8 371 aa18.07■□□□□ 0.48
SF3B4-201ENST00000271628 F13A1P00488 732 aa18.06■□□□□ 0.48
SF3B4-201ENST00000271628 HIBADHP31937 336 aaKnown RBP18.06■□□□□ 0.48
SF3B4-201ENST00000271628 ABCF2Q9UG63 623 aa18.06■□□□□ 0.48
SF3B4-201ENST00000271628 TNRC6CQ9HCJ0 1690 aaKnown RBP18.06■□□□□ 0.48
SF3B4-201ENST00000271628 MBD4O95243 580 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 ZNF445P59923 1031 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 TMED8Q6PL24 325 aaPredicted RBP18.05■□□□□ 0.48
SF3B4-201ENST00000271628 IFNL3Q8IZI9 196 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 RPGRQ92834 1020 aaKnown RBP18.05■□□□□ 0.48
SF3B4-201ENST00000271628 TRIM44Q96DX7 344 aaPredicted RBP18.05■□□□□ 0.48
SF3B4-201ENST00000271628 NACAP1Q9BZK3 213 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 IQSEC3Q9UPP2 1182 aaPredicted RBP18.05■□□□□ 0.48
SF3B4-201ENST00000271628 LEMD3Q9Y2U8 911 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 EVCP57679 992 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 CRY2Q49AN0 593 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 MB21D2Q8IYB1 491 aaPredicted RBP18.05■□□□□ 0.48
SF3B4-201ENST00000271628 NAPBQ9H115 298 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 RAI14Q9P0K7 980 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 MTMR6Q9Y217 621 aa18.05■□□□□ 0.48
SF3B4-201ENST00000271628 WTIPA6NIX2 430 aaPredicted RBP18.04■□□□□ 0.48
SF3B4-201ENST00000271628 IGSF3O75054 1194 aa18.04■□□□□ 0.48
SF3B4-201ENST00000271628 SCRN1Q12765 414 aa18.04■□□□□ 0.48
SF3B4-201ENST00000271628 CYP7A1P22680 504 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 RXRBP28702 533 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 APOBRQ0VD83 1088 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 ARMT1Q9H993 441 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 ZBTB4Q9P1Z0 1013 aaPredicted RBP18.03■□□□□ 0.48
SF3B4-201ENST00000271628 PRC1O43663 620 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 MBD3O95983 291 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 APBA3O96018 575 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 ANP32BQ92688 251 aaKnown RBP18.03■□□□□ 0.48
SF3B4-201ENST00000271628 RBM17Q96I25 401 aaKnown RBP18.03■□□□□ 0.48
SF3B4-201ENST00000271628 TFCP2L1Q9NZI6 479 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 ANKIB1Q9P2G1 1089 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 KIF3AQ9Y496 699 aa18.03■□□□□ 0.48
SF3B4-201ENST00000271628 VPS37CA5D8V6 355 aaPredicted RBP18.02■□□□□ 0.48
SF3B4-201ENST00000271628 GSG1L2A8MUP6 293 aa18.02■□□□□ 0.48
SF3B4-201ENST00000271628 HMGN5P82970 282 aaKnown RBP18.02■□□□□ 0.48
SF3B4-201ENST00000271628 CCDC173Q0VFZ6 552 aa18.02■□□□□ 0.48
SF3B4-201ENST00000271628 CHST3Q7LGC8 479 aa18.02■□□□□ 0.48
SF3B4-201ENST00000271628 FLAD1Q8NFF5 587 aa18.02■□□□□ 0.48
SF3B4-201ENST00000271628 SLC4A4Q9Y6R1 1079 aa18.02■□□□□ 0.48
SF3B4-201ENST00000271628 XDHP47989 1333 aa18.02■□□□□ 0.47
SF3B4-201ENST00000271628 ESPNB1AK53 854 aa18.02■□□□□ 0.47
SF3B4-201ENST00000271628 NCLP19338 710 aaKnown RBP18.02■□□□□ 0.47
SF3B4-201ENST00000271628 PDIA3P30101 505 aaKnown RBP18.02■□□□□ 0.47
SF3B4-201ENST00000271628 NASPP49321 788 aaPredicted RBP18.02■□□□□ 0.47
SF3B4-201ENST00000271628 SMARCC2Q8TAQ2 1214 aa18.02■□□□□ 0.47
SF3B4-201ENST00000271628 MYH13Q9UKX3 1938 aa18.01■□□□□ 0.47
SF3B4-201ENST00000271628 COL1A1P02452 1464 aaPredicted RBP18.01■□□□□ 0.47
SF3B4-201ENST00000271628 MAGEB6P1A0A0J9YX57 407 aa18.01■□□□□ 0.47
SF3B4-201ENST00000271628 CSPP1Q1MSJ5 1256 aa18.01■□□□□ 0.47
SF3B4-201ENST00000271628 NLGN1Q8N2Q7 840 aa18.01■□□□□ 0.47
SF3B4-201ENST00000271628 LCORLQ8N3X6 602 aa18.01■□□□□ 0.47
SF3B4-201ENST00000271628 FAM184AQ8NB25 1140 aa18.01■□□□□ 0.47
SF3B4-201ENST00000271628 PPP1R9BQ96SB3 815 aa18.01■□□□□ 0.47
SF3B4-201ENST00000271628 CNNM2Q9H8M5 875 aa18.01■□□□□ 0.47
SF3B4-201ENST00000271628 POLRMTO00411 1230 aaKnown RBP18■□□□□ 0.47
SF3B4-201ENST00000271628 DHX16O60231 1041 aaKnown RBP18■□□□□ 0.47
SF3B4-201ENST00000271628 BBOX1O75936 387 aa18■□□□□ 0.47
SF3B4-201ENST00000271628 NAA16Q6N069 864 aaPredicted RBP18■□□□□ 0.47
SF3B4-201ENST00000271628 TMEM87AQ8NBN3 555 aa18■□□□□ 0.47
SF3B4-201ENST00000271628 KLRK1P26718 216 aa18■□□□□ 0.47
SF3B4-201ENST00000271628 TDO2P48775 406 aa18■□□□□ 0.47
SF3B4-201ENST00000271628 NBPF3Q9H094 633 aa18■□□□□ 0.47
SF3B4-201ENST00000271628 EPB41L4AQ9HCS5 686 aaPredicted RBP18■□□□□ 0.47
SF3B4-201ENST00000271628 IRS2Q9Y4H2 1338 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 KLRG2A4D1S0 409 aaPredicted RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 HOXA10P31260 410 aaPredicted RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 ZSCAN23Q3MJ62 389 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 FOXD4L6Q3SYB3 417 aaPredicted RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 FOXD4L3Q6VB84 417 aaPredicted RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 C15orf52Q6ZUT6 534 aaKnown RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 TBC1D10CQ8IV04 446 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 MIGA1Q8NAN2 632 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 AKT1S1Q96B36 256 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 CHAMP1Q96JM3 812 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 TMEM87BQ96K49 555 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 NAP1L2Q9ULW6 460 aaPredicted RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 ANTXR2P58335 489 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 DDR1Q08345 913 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 SPTY2D1Q68D10 685 aaPredicted RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 CAVIN1Q6NZI2 390 aaKnown RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 NSUN7Q8NE18 718 aaKnown RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 KRT23Q9C075 422 aa17.99■□□□□ 0.47
SF3B4-201ENST00000271628 ANGEL1Q9UNK9 670 aaKnown RBP17.99■□□□□ 0.47
SF3B4-201ENST00000271628 CACNA1SQ13698 1873 aa17.98■□□□□ 0.47
SF3B4-201ENST00000271628 JAK2O60674 1132 aa17.98■□□□□ 0.47
SF3B4-201ENST00000271628 CCT2P78371 535 aaKnown RBP17.98■□□□□ 0.47
SF3B4-201ENST00000271628 AKNAD1Q5T1N1 836 aa17.98■□□□□ 0.47
SF3B4-201ENST00000271628 USP48Q86UV5 1035 aa17.98■□□□□ 0.47
SF3B4-201ENST00000271628 GPT2Q8TD30 523 aa17.98■□□□□ 0.47
SF3B4-201ENST00000271628 CRAMP1Q96RY5 1269 aa17.98■□□□□ 0.47
SF3B4-201ENST00000271628 TCHHQ07283 1943 aa17.98■□□□□ 0.47
SF3B4-201ENST00000271628 PRKAB2O43741 272 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 ATP2B4P23634 1241 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 MFSD6Q6ZSS7 791 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 TMC4Q7Z404 712 aa17.97■□□□□ 0.47
SF3B4-201ENST00000271628 ZNF804AQ7Z570 1209 aa17.97■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms