RNA–Protein interactions for RNA: ENST00000265081.6

MSH3-201, Transcript of mutS homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH3, Length 4,092 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3-201ENST00000265081 SLC10A5Q5PT55 438 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 TDRD7Q8NHU6 1098 aaKnown RBP13.1□□□□□ -0.31
MSH3-201ENST00000265081 IGDCC4Q8TDY8 1250 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 POLR3EQ9NVU0 708 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 WWC3Q9ULE0 1092 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 TBC1D2BQ9UPU7 963 aa13.1□□□□□ -0.31
MSH3-201ENST00000265081 TYRO3Q06418 890 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 RASGRF1Q13972 1273 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 GORABQ5T7V8 394 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 SMARCC1Q92922 1105 aaPredicted RBP13.09□□□□□ -0.31
MSH3-201ENST00000265081 DACT1Q9NYF0 836 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 LTBP1Q14766 1721 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 ZNF213O14771 459 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 SLC5A1P13866 664 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 RCAN1P53805 252 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 CYB5R4Q7L1T6 521 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 NCOA5Q9HCD5 579 aaKnown RBP13.09□□□□□ -0.31
MSH3-201ENST00000265081 NTRK3Q16288 839 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 SLC9C2Q5TAH2 1124 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 TMEM87BQ96K49 555 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 GOLPH3LQ9H4A5 285 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 SPTLC3Q9NUV7 552 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 IRS2Q9Y4H2 1338 aa13.09□□□□□ -0.31
MSH3-201ENST00000265081 FAM237AA0A1B0GTK4 181 aa13.08□□□□□ -0.31
MSH3-201ENST00000265081 PATL2C9JE40 543 aaKnown RBP13.08□□□□□ -0.31
MSH3-201ENST00000265081 LIFRP42702 1097 aa13.08□□□□□ -0.31
MSH3-201ENST00000265081 FBXO18Q8NFZ0 1043 aa13.08□□□□□ -0.31
MSH3-201ENST00000265081 CDK5RAP2Q96SN8 1893 aa13.08□□□□□ -0.31
MSH3-201ENST00000265081 GPHNQ9NQX3 736 aaPredicted RBP13.08□□□□□ -0.31
MSH3-201ENST00000265081 CCDC9Q9Y3X0 531 aaKnown RBP13.08□□□□□ -0.31
MSH3-201ENST00000265081 ADCY5O95622 1261 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 CCDC152Q4G0S7 254 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 BRAPQ7Z569 592 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 ANAPC4Q9UJX5 808 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 MORC2Q9Y6X9 1032 aaPredicted RBP13.08□□□□□ -0.32
MSH3-201ENST00000265081 UBR3Q6ZT12 1888 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 DHX16O60231 1041 aaKnown RBP13.08□□□□□ -0.32
MSH3-201ENST00000265081 ATP6V1AP38606 617 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 WASHC4Q2M389 1173 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 PLA2G4DQ86XP0 818 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 STAG1Q8WVM7 1258 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 ZNF396Q96N95 335 aaPredicted RBP13.08□□□□□ -0.32
MSH3-201ENST00000265081 CCDC85AQ96PX6 553 aaPredicted RBP13.08□□□□□ -0.32
MSH3-201ENST00000265081 USP28Q96RU2 1077 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 LY9Q9HBG7 655 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 ANGEL1Q9UNK9 670 aaKnown RBP13.08□□□□□ -0.32
MSH3-201ENST00000265081 CTAGE5O15320 804 aa13.08□□□□□ -0.32
MSH3-201ENST00000265081 FAM217BQ9NTX9 383 aaPredicted RBP13.08□□□□□ -0.32
MSH3-201ENST00000265081 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP13.08□□□□□ -0.32
MSH3-201ENST00000265081 MYH6P13533 1939 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 H3BQV1 296 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 YEATS4O95619 227 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 MSNP26038 577 aaKnown RBP13.07□□□□□ -0.32
MSH3-201ENST00000265081 IFFO2Q5TF58 517 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 DDX11Q96FC9 970 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 TFIP11Q9UBB9 837 aaKnown RBP13.07□□□□□ -0.32
MSH3-201ENST00000265081 FOCADQ5VW36 1801 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 GNAT2P19087 354 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 CDC25BP30305 580 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 RC3H1Q5TC82 1133 aaKnown RBP13.07□□□□□ -0.32
MSH3-201ENST00000265081 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.07□□□□□ -0.32
MSH3-201ENST00000265081 GSG1L2A8MUP6 293 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 FGRP09769 529 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 SARM1Q6SZW1 724 aa13.07□□□□□ -0.32
MSH3-201ENST00000265081 MYH2Q9UKX2 1941 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 CCT2P78371 535 aaKnown RBP13.06□□□□□ -0.32
MSH3-201ENST00000265081 VPS72Q15906 364 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 TMED8Q6PL24 325 aaPredicted RBP13.06□□□□□ -0.32
MSH3-201ENST00000265081 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.06□□□□□ -0.32
MSH3-201ENST00000265081 FMR1NBQ8N0W7 255 aaPredicted RBP13.06□□□□□ -0.32
MSH3-201ENST00000265081 LINC00301Q8NCQ3 95 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 LINC00116Q8NCU8 138 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 TNMDQ9H2S6 317 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 SEC31BQ9NQW1 1179 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 IQCB1Q15051 598 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 ADALQ6DHV7 355 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 CHST3Q7LGC8 479 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 ZNF330Q9Y3S2 320 aaPredicted RBP13.06□□□□□ -0.32
MSH3-201ENST00000265081 KLF18A0A0U1RQI7 1052 aa13.06□□□□□ -0.32
MSH3-201ENST00000265081 CDC5LQ99459 802 aaKnown RBP13.06□□□□□ -0.32
MSH3-201ENST00000265081 KIF23Q02241 960 aaPredicted RBP13.05□□□□□ -0.32
MSH3-201ENST00000265081 APOA5Q6Q788 366 aa13.05□□□□□ -0.32
MSH3-201ENST00000265081 IFNL3Q8IZI9 196 aa13.05□□□□□ -0.32
MSH3-201ENST00000265081 PIBF1Q8WXW3 757 aa13.05□□□□□ -0.32
MSH3-201ENST00000265081 DENND2AQ9ULE3 1009 aa13.05□□□□□ -0.32
MSH3-201ENST00000265081 FAM160A1Q05DH4 1040 aa13.05□□□□□ -0.32
MSH3-201ENST00000265081 BCL2L12Q9HB09 334 aa13.05□□□□□ -0.32
MSH3-201ENST00000265081 CBX8Q9HC52 389 aa13.05□□□□□ -0.32
MSH3-201ENST00000265081 IGSF3O75054 1194 aa13.05□□□□□ -0.32
MSH3-201ENST00000265081 TPM3P06753 285 aa13.05□□□□□ -0.32
MSH3-201ENST00000265081 U2AF2P26368 475 aaKnown RBP eCLIP13.05□□□□□ -0.322e-7■■□□□ 12.4
MSH3-201ENST00000265081 BSDC1Q9NW68 430 aaPredicted RBP13.05□□□□□ -0.32
MSH3-201ENST00000265081 HAND2P61296 217 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 CHRNDQ07001 517 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 BPIFA3Q9BQP9 254 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 CNNM2Q9H8M5 875 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 GOLGA8BA8MQT2 603 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 KIF28PB7ZC32 967 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 TPM2P07951 284 aa13.04□□□□□ -0.32
MSH3-201ENST00000265081 KCNF1Q9H3M0 494 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms