RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 LMBRD1Q9NUN5 540 aa12.19□□□□□ -0.46
CD44-201ENST00000263398 KIF24Q5T7B8 1368 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 RXRAP19793 462 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 KARSQ15046 597 aaKnown RBP12.18□□□□□ -0.46
CD44-201ENST00000263398 FAM173BQ6P4H8 233 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 GIGYF2Q6Y7W6 1299 aaKnown RBP12.18□□□□□ -0.46
CD44-201ENST00000263398 MCM9Q9NXL9 1143 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 HSPA4P34932 840 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 PRPHP41219 470 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 UBXN1Q04323 297 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 CCDC155Q8N6L0 562 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 KCNA6P17658 529 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 ANO1Q5XXA6 986 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 TM6SF1Q9BZW5 370 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 GUCA1BQ9UMX6 200 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 ZMYM3Q14202 1370 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 PLCG2P16885 1265 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 ST5P78524 1137 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 ZNF569Q5MCW4 686 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 KBTBD3Q8NAB2 608 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 APPBP2Q92624 585 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 ERO1AQ96HE7 468 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 FAM227BQ96M60 508 aa12.18□□□□□ -0.46
CD44-201ENST00000263398 BAG1Q99933 345 aaPredicted RBP12.18□□□□□ -0.46
CD44-201ENST00000263398 KRT13P13646 458 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 CABLES1Q8TDN4 633 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 LEO1Q8WVC0 666 aaPredicted RBP12.17□□□□□ -0.46
CD44-201ENST00000263398 ANGEL1Q9UNK9 670 aaKnown RBP12.17□□□□□ -0.46
CD44-201ENST00000263398 USP19O94966 1318 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 KIAA0232Q92628 1395 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 BRD1O95696 1058 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 UBE4AQ14139 1066 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 UBE2Q2Q8WVN8 375 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 LMBR1Q8WVP7 490 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 RBM28Q9NW13 759 aaKnown RBP12.17□□□□□ -0.46
CD44-201ENST00000263398 ZNF219Q9P2Y4 722 aaPredicted RBP12.17□□□□□ -0.46
CD44-201ENST00000263398 YEATS2Q9ULM3 1422 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 ADGBQ8N7X0 1667 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 MBD4O95243 580 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 MCM7P33993 719 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 TPTE2Q6XPS3 522 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 CCDC129Q6ZRS4 1044 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 DDX12PQ92771 950 aa12.17□□□□□ -0.46
CD44-201ENST00000263398 RRP36Q96EU6 259 aaKnown RBP12.17□□□□□ -0.46
CD44-201ENST00000263398 AKR1B15C9JRZ8 316 aaPredicted RBP12.16□□□□□ -0.46
CD44-201ENST00000263398 DDB1Q16531 1140 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 CAPN2P17655 700 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 ACTN2P35609 894 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 ZNF804AQ7Z570 1209 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 NEK11Q8NG66 645 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 NYXQ9GZU5 481 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 DEXIO95424 95 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 KCNH3Q9ULD8 1083 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 B4E1Z4 1266 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 PPP1R2P41236 205 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 WDR78Q5VTH9 848 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 KLHDC4Q8TBB5 520 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 OGFRQ9NZT2 677 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 ABCC4O15439 1325 aa12.16□□□□□ -0.46
CD44-201ENST00000263398 IBSPP21815 317 aaPredicted RBP12.15□□□□□ -0.46
CD44-201ENST00000263398 FAM89AQ96GI7 184 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 CBX8Q9HC52 389 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 PUF60Q9UHX1 559 aaKnown RBP12.15□□□□□ -0.46
CD44-201ENST00000263398 PCDH11XQ9BZA7 1347 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 PCDH11YQ9BZA8 1340 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 TNNI2P48788 182 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 HS2ST1Q7LGA3 356 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 RSPH14Q9UHP6 348 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 VWA3AA6NCI4 1184 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 VAV2P52735 878 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 TERF1P54274 439 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 ACSBG1Q96GR2 724 aa12.15□□□□□ -0.46
CD44-201ENST00000263398 NCOA5Q9HCD5 579 aaKnown RBP12.15□□□□□ -0.46
CD44-201ENST00000263398 ZNF75DP51815 510 aa12.15□□□□□ -0.47
CD44-201ENST00000263398 SMARCC2Q8TAQ2 1214 aa12.15□□□□□ -0.47
CD44-201ENST00000263398 ATRIPQ8WXE1 791 aa12.15□□□□□ -0.47
CD44-201ENST00000263398 RASAL2Q9UJF2 1139 aa12.15□□□□□ -0.47
CD44-201ENST00000263398 MYO5CQ9NQX4 1742 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 ARID5AQ03989 594 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 ARFGAP2Q8N6H7 521 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 ZNF622Q969S3 477 aaKnown RBP eCLIP12.14□□□□□ -0.47
CD44-201ENST00000263398 FERMT2Q96AC1 680 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 TMEM63CQ9P1W3 806 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 ARHGEF5Q12774 1597 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 GPAA1O43292 621 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 CUTAO60888 179 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 EVCP57679 992 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 MLKLQ8NB16 471 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 SUCLG2Q96I99 432 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 ZKSCAN3Q9BRR0 538 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 ANKRD2Q9GZV1 360 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 LGR6Q9HBX8 967 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 SPDYE3A6NKU9 549 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 GADD45BO75293 160 aaPredicted RBP12.14□□□□□ -0.47
CD44-201ENST00000263398 GCKRQ14397 625 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 DIS3L2Q8IYB7 885 aaKnown RBP12.14□□□□□ -0.47
CD44-201ENST00000263398 BICD1Q96G01 975 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 ATP10AO60312 1499 aa12.14□□□□□ -0.47
CD44-201ENST00000263398 PLA2R1Q13018 1463 aa12.13□□□□□ -0.47
CD44-201ENST00000263398 RHOXF2BP0C7M4 288 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms