RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 FBXO18Q8NFZ0 1043 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 ZCRB1Q8TBF4 217 aaKnown RBP14.65□□□□□ -0.06
LIG1-201ENST00000263274 CHMP4CQ96CF2 233 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 CLIC6Q96NY7 704 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 ADGRL3Q9HAR2 1447 aa14.65□□□□□ -0.06
LIG1-201ENST00000263274 NFAT5O94916 1531 aa14.64□□□□□ -0.07
LIG1-201ENST00000263274 ATP1A3P13637 1013 aa14.64□□□□□ -0.07
LIG1-201ENST00000263274 METAP2P50579 478 aaKnown RBP eCLIP14.64□□□□□ -0.07
LIG1-201ENST00000263274 ANO1Q5XXA6 986 aa14.64□□□□□ -0.07
LIG1-201ENST00000263274 FMR1NBQ8N0W7 255 aaPredicted RBP14.64□□□□□ -0.07
LIG1-201ENST00000263274 ANKRD7Q92527 254 aa14.64□□□□□ -0.07
LIG1-201ENST00000263274 KIF28PB7ZC32 967 aa14.64□□□□□ -0.07
LIG1-201ENST00000263274 CTIFO43310 598 aaKnown RBP14.64□□□□□ -0.07
LIG1-201ENST00000263274 PFKFB1P16118 471 aa14.64□□□□□ -0.07
LIG1-201ENST00000263274 CCAR2Q8N163 923 aaKnown RBP14.64□□□□□ -0.07
LIG1-201ENST00000263274 AKAP2Q9Y2D5 859 aa14.64□□□□□ -0.07
LIG1-201ENST00000263274 RTEL1Q9NZ71 1219 aa14.64□□□□□ -0.07
LIG1-201ENST00000263274 DNAI1Q9UI46 699 aa14.64□□□□□ -0.07
LIG1-201ENST00000263274 CASP7P55210 303 aa14.63□□□□□ -0.07
LIG1-201ENST00000263274 GSDMDP57764 484 aa14.63□□□□□ -0.07
LIG1-201ENST00000263274 UBASH3AP57075 661 aa14.63□□□□□ -0.07
LIG1-201ENST00000263274 PNOCQ13519 176 aa14.63□□□□□ -0.07
LIG1-201ENST00000263274 LRP10Q7Z4F1 713 aa14.63□□□□□ -0.07
LIG1-201ENST00000263274 CCDC191Q8NCU4 936 aa14.63□□□□□ -0.07
LIG1-201ENST00000263274 ZKSCAN3Q9BRR0 538 aa14.63□□□□□ -0.07
LIG1-201ENST00000263274 URI1O94763 535 aaPredicted RBP14.62□□□□□ -0.07
LIG1-201ENST00000263274 CCZ1BP86790 482 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 CCZ1P86791 482 aaPredicted RBP14.62□□□□□ -0.07
LIG1-201ENST00000263274 ERCC6LQ2NKX8 1250 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 SARM1Q6SZW1 724 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 OLFM4Q6UX06 510 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.62□□□□□ -0.074e-7■■■■□ 19.6
LIG1-201ENST00000263274 SLC26A6Q9BXS9 759 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 OGFRQ9NZT2 677 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 ERICH4A6NGS2 130 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 UBAP1LF5GYI3 381 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 SLU7O95391 586 aaKnown RBP14.62□□□□□ -0.07
LIG1-201ENST00000263274 CDC25BP30305 580 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 FANCCQ00597 558 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 KIF6Q6ZMV9 814 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 NUP133Q8WUM0 1156 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 APPBP2Q92624 585 aa14.62□□□□□ -0.07
LIG1-201ENST00000263274 CMTR1Q8N1G2 835 aaKnown RBP14.61□□□□□ -0.07
LIG1-201ENST00000263274 CNNM3Q8NE01 707 aa14.61□□□□□ -0.07
LIG1-201ENST00000263274 MNS1Q8NEH6 495 aa14.61□□□□□ -0.07
LIG1-201ENST00000263274 UTP14AQ9BVJ6 771 aaKnown RBP14.61□□□□□ -0.07
LIG1-201ENST00000263274 UBE2Q2LH0YL09 131 aa14.61□□□□□ -0.07
LIG1-201ENST00000263274 SNAP23O00161 211 aa14.61□□□□□ -0.07
LIG1-201ENST00000263274 IARSP41252 1262 aaKnown RBP14.61□□□□□ -0.07
LIG1-201ENST00000263274 ATL3Q6DD88 541 aa14.61□□□□□ -0.07
LIG1-201ENST00000263274 VPS37DQ86XT2 251 aa14.61□□□□□ -0.07
LIG1-201ENST00000263274 SECISBP2LQ93073 1101 aaKnown RBP14.61□□□□□ -0.07
LIG1-201ENST00000263274 AIDAQ96BJ3 306 aa14.61□□□□□ -0.07
LIG1-201ENST00000263274 MEGF6O75095 1541 aa14.61□□□□□ -0.07
LIG1-201ENST00000263274 GOLGA8AA7E2F4 631 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 KRT40Q6A162 431 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 SENP2Q9HC62 589 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 WDHD1O75717 1129 aaPredicted RBP14.6□□□□□ -0.07
LIG1-201ENST00000263274 TMEM67Q5HYA8 995 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 TMEM51Q9NW97 253 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 IFIT3O14879 490 aaKnown RBP14.6□□□□□ -0.07
LIG1-201ENST00000263274 NLRP12P59046 1061 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 DNAJC10Q8IXB1 793 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 FEZ1Q99689 392 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 TBC1D2BQ9UPU7 963 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 KDM3BQ7LBC6 1761 aa14.6□□□□□ -0.07
LIG1-201ENST00000263274 TOP1P11387 765 aaKnown RBP14.59□□□□□ -0.07
LIG1-201ENST00000263274 KIF23Q02241 960 aaPredicted RBP14.59□□□□□ -0.07
LIG1-201ENST00000263274 ARMCX5Q6P1M9 558 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 HOMEZQ8IX15 550 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 MED1Q15648 1581 aaPredicted RBP14.59□□□□□ -0.07
LIG1-201ENST00000263274 ZBTB43O43298 467 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 YEATS4O95619 227 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 ZFYP08048 801 aaPredicted RBP14.59□□□□□ -0.07
LIG1-201ENST00000263274 ANTXR2P58335 489 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 CTDSPL2Q05D32 466 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 KMT5BQ4FZB7 885 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 BRAPQ7Z569 592 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 JMYQ8N9B5 988 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 TRMT112Q9UI30 125 aaKnown RBP14.59□□□□□ -0.07
LIG1-201ENST00000263274 IQSEC3Q9UPP2 1182 aaPredicted RBP14.59□□□□□ -0.07
LIG1-201ENST00000263274 ITGA6P23229 1130 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 ZNF827Q17R98 1081 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 FBXO38Q6PIJ6 1188 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 NBPF11Q86T75 865 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 ZNF397Q8NF99 534 aaPredicted RBP14.59□□□□□ -0.07
LIG1-201ENST00000263274 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.59□□□□□ -0.076e-6■□□□□ 8.9
LIG1-201ENST00000263274 TMOD3Q9NYL9 352 aa14.59□□□□□ -0.07
LIG1-201ENST00000263274 ANGEL1Q9UNK9 670 aaKnown RBP14.59□□□□□ -0.07
LIG1-201ENST00000263274 PALLDQ8WX93 1383 aa14.58□□□□□ -0.07
LIG1-201ENST00000263274 RBM6P78332 1123 aaKnown RBP14.58□□□□□ -0.08
LIG1-201ENST00000263274 E4F1Q66K89 784 aaPredicted RBP14.58□□□□□ -0.08
LIG1-201ENST00000263274 KLHL10Q6JEL2 608 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 PPP1R13BQ96KQ4 1090 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 KCNJ14Q9UNX9 436 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 HPS5Q9UPZ3 1129 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 JCADQ9P266 1359 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 A0A1W2PQ27 194 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 A0A1W2PQ64 194 aa14.58□□□□□ -0.08
LIG1-201ENST00000263274 A0A1W2PQD8 194 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms