RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RNF187Q5TA31 235 aaPredicted RBP21.62■■□□□ 1.05
UPF1-201ENST00000262803 SBNO2Q9Y2G9 1366 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 CTAGE15A4D2H0 777 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 CTAGE8P0CG41 777 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 CTAGE6Q86UF2 777 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 CTAGE4Q8IX94 777 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 SUPT20HQ8NEM7 779 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 CTTNBP2Q8WZ74 1663 aa21.62■■□□□ 1.05
UPF1-201ENST00000262803 BICC1Q9H694 974 aaKnown RBP21.61■■□□□ 1.05
UPF1-201ENST00000262803 PDE6BP35913 854 aa21.61■■□□□ 1.05
UPF1-201ENST00000262803 PICALMQ13492 652 aa21.61■■□□□ 1.05
UPF1-201ENST00000262803 TFCP2L1Q9NZI6 479 aa21.61■■□□□ 1.05
UPF1-201ENST00000262803 SLU7O95391 586 aaKnown RBP21.61■■□□□ 1.05
UPF1-201ENST00000262803 NCKAP5LQ9HCH0 1330 aa21.61■■□□□ 1.05
UPF1-201ENST00000262803 TCHPQ9BT92 498 aa21.61■■□□□ 1.05
UPF1-201ENST00000262803 ZHX1Q9UKY1 873 aaPredicted RBP21.61■■□□□ 1.05
UPF1-201ENST00000262803 WDR62O43379 1518 aa21.61■■□□□ 1.05
UPF1-201ENST00000262803 UHRF1BP1Q6BDS2 1440 aa21.61■■□□□ 1.05
UPF1-201ENST00000262803 SPATA24Q86W54 205 aa21.6■■□□□ 1.05
UPF1-201ENST00000262803 JAKMIP2Q96AA8 810 aa21.6■■□□□ 1.05
UPF1-201ENST00000262803 SNX16P57768 344 aa21.6■■□□□ 1.05
UPF1-201ENST00000262803 KRT86O43790 486 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 ATP2A2P16615 1042 aaKnown RBP21.59■■□□□ 1.05
UPF1-201ENST00000262803 C8orf37Q96NL8 207 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 MCM9Q9NXL9 1143 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 STK32BQ9NY57 414 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 ZMYM4Q5VZL5 1548 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 TRAPPC3LQ5T215 181 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 MRVI1Q9Y6F6 885 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 YTHDC2Q9H6S0 1430 aaKnown RBP21.59■■□□□ 1.05
UPF1-201ENST00000262803 A0A1W2PRG0 241 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 OPA1O60313 960 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 VEZTQ9HBM0 779 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 HOXC9P31274 260 aa21.59■■□□□ 1.05
UPF1-201ENST00000262803 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.59■■□□□ 1.056e-7■■■■■ 32.1
UPF1-201ENST00000262803 V9GYY5 206 aaPredicted RBP21.59■■□□□ 1.05
UPF1-201ENST00000262803 MRPS9P82933 396 aaKnown RBP21.58■■□□□ 1.05
UPF1-201ENST00000262803 DDX21Q9NR30 783 aaKnown RBP eCLIP21.58■■□□□ 1.05
UPF1-201ENST00000262803 EIF4G3O43432 1585 aaKnown RBP21.58■■□□□ 1.05
UPF1-201ENST00000262803 IP6K1Q92551 441 aa21.58■■□□□ 1.05
UPF1-201ENST00000262803 TRIM35Q9UPQ4 493 aa21.58■■□□□ 1.05
UPF1-201ENST00000262803 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.58■■□□□ 1.05
UPF1-201ENST00000262803 KIAA0556O60303 1618 aa21.58■■□□□ 1.04
UPF1-201ENST00000262803 PARP1P09874 1014 aaKnown RBP21.58■■□□□ 1.04
UPF1-201ENST00000262803 ACSBG1Q96GR2 724 aa21.58■■□□□ 1.04
UPF1-201ENST00000262803 IFNKQ9P0W0 207 aa21.58■■□□□ 1.04
UPF1-201ENST00000262803 NEK11Q8NG66 645 aa21.58■■□□□ 1.04
UPF1-201ENST00000262803 RAB3IL1Q8TBN0 382 aa21.58■■□□□ 1.04
UPF1-201ENST00000262803 TBX22Q9Y458 520 aa21.58■■□□□ 1.04
UPF1-201ENST00000262803 RNMTO43148 476 aaKnown RBP21.57■■□□□ 1.04
UPF1-201ENST00000262803 TSGA10Q9BZW7 698 aa21.57■■□□□ 1.04
UPF1-201ENST00000262803 ARHGEF10LQ9HCE6 1279 aa21.57■■□□□ 1.04
UPF1-201ENST00000262803 PLCD1P51178 756 aa21.57■■□□□ 1.04
UPF1-201ENST00000262803 PPP2R5BQ15173 497 aa21.57■■□□□ 1.04
UPF1-201ENST00000262803 DTHD1Q6ZMT9 781 aa21.57■■□□□ 1.04
UPF1-201ENST00000262803 CCDC65Q8IXS2 484 aa21.57■■□□□ 1.04
UPF1-201ENST00000262803 IL13P35225 146 aa21.57■■□□□ 1.04
UPF1-201ENST00000262803 IQUBQ8NA54 791 aa21.57■■□□□ 1.04
UPF1-201ENST00000262803 HELBQ8NG08 1087 aaPredicted RBP21.57■■□□□ 1.04
UPF1-201ENST00000262803 GCP02774 474 aa21.56■■□□□ 1.04
UPF1-201ENST00000262803 MCM6Q14566 821 aa21.56■■□□□ 1.04
UPF1-201ENST00000262803 VWA3BQ502W6 1294 aa21.56■■□□□ 1.04
UPF1-201ENST00000262803 KCNG1Q9UIX4 513 aa21.56■■□□□ 1.04
UPF1-201ENST00000262803 KIF5AQ12840 1032 aa21.56■■□□□ 1.04
UPF1-201ENST00000262803 RBSNQ9H1K0 784 aa21.56■■□□□ 1.04
UPF1-201ENST00000262803 TMOD4Q9NZQ9 345 aa21.56■■□□□ 1.04
UPF1-201ENST00000262803 ZNF354CQ86Y25 554 aa21.56■■□□□ 1.04
UPF1-201ENST00000262803 TMEM87BQ96K49 555 aa21.55■■□□□ 1.04
UPF1-201ENST00000262803 F8W031 263 aaPredicted RBP21.55■■□□□ 1.04
UPF1-201ENST00000262803 AOX1Q06278 1338 aa21.55■■□□□ 1.04
UPF1-201ENST00000262803 RNF123Q5XPI4 1314 aa21.55■■□□□ 1.04
UPF1-201ENST00000262803 RXRAP19793 462 aa21.55■■□□□ 1.04
UPF1-201ENST00000262803 STX17P56962 302 aa21.55■■□□□ 1.04
UPF1-201ENST00000262803 SLC8A3P57103 927 aa21.55■■□□□ 1.04
UPF1-201ENST00000262803 CABLES1Q8TDN4 633 aa21.55■■□□□ 1.04
UPF1-201ENST00000262803 EXOC7Q9UPT5 735 aa21.55■■□□□ 1.04
UPF1-201ENST00000262803 MAGEB6Q8N7X4 407 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 MIGA1Q8NAN2 632 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 NSFL1CQ9UNZ2 370 aaKnown RBP21.54■■□□□ 1.04
UPF1-201ENST00000262803 CSRNP2Q9H175 543 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 CHL1O00533 1208 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 RPS6KB1P23443 525 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 HAUS3Q68CZ6 603 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 CNBD1Q8NA66 436 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 MMRN2Q9H8L6 949 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 CTAGE9A4FU28 777 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 GABPB2Q8TAK5 448 aaPredicted RBP21.54■■□□□ 1.04
UPF1-201ENST00000262803 KIFAP3Q92845 792 aa21.54■■□□□ 1.04
UPF1-201ENST00000262803 GAS8O95995 478 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 PLS1Q14651 629 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 TAF12Q16514 161 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 PICK1Q9NRD5 415 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 CA8P35219 290 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 PLBD2Q8NHP8 589 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 A0A1B0GVL5 298 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 CCDC42Q96M95 316 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 LZTS2Q9BRK4 669 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 MTUS1Q9ULD2 1270 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 TRIM14Q14142 442 aa21.53■■□□□ 1.04
UPF1-201ENST00000262803 SMTNP53814 917 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms