RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 NAT10Q9H0A0 1025 aaKnown RBP19.14■□□□□ 0.65
HOXD3-201ENST00000249440 POLR3EQ9NVU0 708 aa19.14■□□□□ 0.65
HOXD3-201ENST00000249440 MYH3P11055 1940 aa19.14■□□□□ 0.65
HOXD3-201ENST00000249440 EP400Q96L91 3159 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 ANKRD18BA2A2Z9 1011 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 YEATS4O95619 227 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 ANTXR2P58335 489 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 CNNM1Q9NRU3 951 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 NLRP10Q86W26 655 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 CEP57L1Q8IYX8 460 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 RGS22Q8NE09 1264 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 C8orf37Q96NL8 207 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 SDF4Q9BRK5 362 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 GREM2Q9H772 168 aa19.13■□□□□ 0.65
HOXD3-201ENST00000249440 COL14A1Q05707 1796 aaKnown RBP19.12■□□□□ 0.65
HOXD3-201ENST00000249440 POLR3DP05423 398 aaPredicted RBP19.12■□□□□ 0.65
HOXD3-201ENST00000249440 ADD2P35612 726 aa19.12■□□□□ 0.65
HOXD3-201ENST00000249440 SLC9C2Q5TAH2 1124 aa19.12■□□□□ 0.65
HOXD3-201ENST00000249440 OTUD7BQ6GQQ9 843 aa19.12■□□□□ 0.65
HOXD3-201ENST00000249440 GPTP24298 496 aa19.12■□□□□ 0.65
HOXD3-201ENST00000249440 CTSWP56202 376 aa19.12■□□□□ 0.65
HOXD3-201ENST00000249440 HLFQ16534 295 aa19.12■□□□□ 0.65
HOXD3-201ENST00000249440 SYNE3Q6ZMZ3 975 aa19.12■□□□□ 0.65
HOXD3-201ENST00000249440 SYNE4Q8N205 404 aa19.12■□□□□ 0.65
HOXD3-201ENST00000249440 A0A1B0GVL5 298 aa19.11■□□□□ 0.65
HOXD3-201ENST00000249440 NEMFO60524 1076 aa19.11■□□□□ 0.65
HOXD3-201ENST00000249440 MYSM1Q5VVJ2 828 aa19.11■□□□□ 0.65
HOXD3-201ENST00000249440 DHX40Q8IX18 779 aaKnown RBP19.11■□□□□ 0.65
HOXD3-201ENST00000249440 CACTINQ8WUQ7 758 aaKnown RBP19.11■□□□□ 0.65
HOXD3-201ENST00000249440 CLIC4Q9Y696 253 aa19.11■□□□□ 0.65
HOXD3-201ENST00000249440 ITGB4P16144 1822 aa19.11■□□□□ 0.65
HOXD3-201ENST00000249440 SPTLC2O15270 562 aa19.11■□□□□ 0.65
HOXD3-201ENST00000249440 CCDC144BQ3MJ40 725 aa19.11■□□□□ 0.65
HOXD3-201ENST00000249440 CCDC144CPQ8IYA2 1237 aa19.11■□□□□ 0.65
HOXD3-201ENST00000249440 ATRNO75882 1429 aa19.1■□□□□ 0.65
HOXD3-201ENST00000249440 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.1■□□□□ 0.65
HOXD3-201ENST00000249440 RIOK3O14730 519 aaKnown RBP19.1■□□□□ 0.65
HOXD3-201ENST00000249440 NDUFA8P51970 172 aa19.1■□□□□ 0.65
HOXD3-201ENST00000249440 UBE3CQ15386 1083 aa19.1■□□□□ 0.65
HOXD3-201ENST00000249440 ZRSR1Q15695 479 aaKnown RBP19.1■□□□□ 0.65
HOXD3-201ENST00000249440 ANGEL1Q9UNK9 670 aaKnown RBP19.1■□□□□ 0.65
HOXD3-201ENST00000249440 IRS4O14654 1257 aaPredicted RBP19.09■□□□□ 0.65
HOXD3-201ENST00000249440 PDE8BO95263 885 aa19.09■□□□□ 0.65
HOXD3-201ENST00000249440 LRRC8AQ8IWT6 810 aa19.09■□□□□ 0.65
HOXD3-201ENST00000249440 VGLL2Q8N8G2 317 aa19.09■□□□□ 0.65
HOXD3-201ENST00000249440 ANKRD36CQ5JPF3 1778 aa19.09■□□□□ 0.65
HOXD3-201ENST00000249440 NRAPQ86VF7 1730 aa19.09■□□□□ 0.65
HOXD3-201ENST00000249440 TSC1Q92574 1164 aa19.09■□□□□ 0.65
HOXD3-201ENST00000249440 C4AP0C0L4 1744 aa19.09■□□□□ 0.65
HOXD3-201ENST00000249440 C4BP0C0L5 1744 aa19.09■□□□□ 0.65
HOXD3-201ENST00000249440 IDH1O75874 414 aaKnown RBP19.08■□□□□ 0.65
HOXD3-201ENST00000249440 APPP05067 770 aa19.08■□□□□ 0.65
HOXD3-201ENST00000249440 RAB11FIP4Q86YS3 637 aa19.08■□□□□ 0.65
HOXD3-201ENST00000249440 KIAA1468Q9P260 1216 aa19.08■□□□□ 0.65
HOXD3-201ENST00000249440 TRMT112Q9UI30 125 aaKnown RBP19.08■□□□□ 0.65
HOXD3-201ENST00000249440 TBC1D2BQ9UPU7 963 aa19.08■□□□□ 0.65
HOXD3-201ENST00000249440 KAT6BQ8WYB5 2073 aa19.08■□□□□ 0.65
HOXD3-201ENST00000249440 ZMYM6O95789 1325 aa19.08■□□□□ 0.65
HOXD3-201ENST00000249440 CDKL5O76039 1030 aa19.08■□□□□ 0.64
HOXD3-201ENST00000249440 KIF23Q02241 960 aaPredicted RBP19.08■□□□□ 0.64
HOXD3-201ENST00000249440 ZNF710Q8N1W2 664 aa19.08■□□□□ 0.64
HOXD3-201ENST00000249440 C16orf45Q96MC5 204 aaPredicted RBP19.08■□□□□ 0.64
HOXD3-201ENST00000249440 MYO5AQ9Y4I1 1855 aaKnown RBP19.08■□□□□ 0.64
HOXD3-201ENST00000249440 PDE8AO60658 829 aa19.07■□□□□ 0.64
HOXD3-201ENST00000249440 UQCRFS1P1P0C7P4 283 aa19.07■□□□□ 0.64
HOXD3-201ENST00000249440 ANO1Q5XXA6 986 aa19.07■□□□□ 0.64
HOXD3-201ENST00000249440 AOPEPQ8N6M6 819 aa19.07■□□□□ 0.64
HOXD3-201ENST00000249440 ERCC4Q92889 916 aaPredicted RBP19.07■□□□□ 0.64
HOXD3-201ENST00000249440 NBPF3Q9H094 633 aa19.07■□□□□ 0.64
HOXD3-201ENST00000249440 BCL2L12Q9HB09 334 aa19.07■□□□□ 0.64
HOXD3-201ENST00000249440 NUP98P52948 1817 aa19.07■□□□□ 0.64
HOXD3-201ENST00000249440 CYP19A1P11511 503 aaPredicted RBP19.07■□□□□ 0.64
HOXD3-201ENST00000249440 METAP2P50579 478 aaKnown RBP eCLIP19.07■□□□□ 0.64
HOXD3-201ENST00000249440 CCDC102BQ68D86 513 aa19.07■□□□□ 0.64
HOXD3-201ENST00000249440 CPLX2Q6PUV4 134 aaKnown RBP19.07■□□□□ 0.64
HOXD3-201ENST00000249440 A0A087WWV3 80 aa19.06■□□□□ 0.64
HOXD3-201ENST00000249440 ARID4AP29374 1257 aaPredicted RBP19.06■□□□□ 0.64
HOXD3-201ENST00000249440 BPIFA3Q9BQP9 254 aa19.06■□□□□ 0.64
HOXD3-201ENST00000249440 PIH1D3Q9NQM4 214 aaKnown RBP19.06■□□□□ 0.64
HOXD3-201ENST00000249440 GJB4Q9NTQ9 266 aa19.06■□□□□ 0.64
HOXD3-201ENST00000249440 ZNF532Q9HCE3 1301 aa19.06■□□□□ 0.64
HOXD3-201ENST00000249440 KIF28PB7ZC32 967 aa19.06■□□□□ 0.64
HOXD3-201ENST00000249440 TNNT1P13805 278 aa19.06■□□□□ 0.64
HOXD3-201ENST00000249440 TPD52L1Q16890 204 aaPredicted RBP19.06■□□□□ 0.64
HOXD3-201ENST00000249440 TBC1D10CQ8IV04 446 aa19.06■□□□□ 0.64
HOXD3-201ENST00000249440 TMEM87BQ96K49 555 aa19.06■□□□□ 0.64
HOXD3-201ENST00000249440 SH2B2O14492 632 aaPredicted RBP19.05■□□□□ 0.64
HOXD3-201ENST00000249440 CTIFO43310 598 aaKnown RBP19.05■□□□□ 0.64
HOXD3-201ENST00000249440 CMA1P23946 247 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 RBM6P78332 1123 aaKnown RBP19.05■□□□□ 0.64
HOXD3-201ENST00000249440 CYB5R4Q7L1T6 521 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 NGLY1Q96IV0 654 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 CCDC94Q9BW85 323 aaPredicted RBP19.05■□□□□ 0.64
HOXD3-201ENST00000249440 PAXBP1Q9Y5B6 917 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 TNKS1BP1Q9C0C2 1729 aaKnown RBP19.05■□□□□ 0.64
HOXD3-201ENST00000249440 SLIT2O94813 1529 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 ZNF202O95125 648 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 SLC3A2P08195 630 aaKnown RBP19.05■□□□□ 0.64
HOXD3-201ENST00000249440 PDE6AP16499 860 aa19.05■□□□□ 0.64
HOXD3-201ENST00000249440 PUM3Q15397 648 aaKnown RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms