RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 ADTRPQ96IZ2 230 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 UBE2E2Q96LR5 201 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 MS4A10Q96PG2 267 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 FBXO7Q9Y3I1 522 aa9.06□□□□□ -0.96
CLN3-257ENST00000637110 IGLV1-40P01703 118 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 SCAND1P57086 179 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 VMA21Q3ZAQ7 101 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 CROCCP3Q8IVE0 287 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 TCTEX1D1Q8N7M0 179 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 MINDY2Q8NBR6 621 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 YIPF6Q96EC8 236 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 PHB2Q99623 299 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 GNB4Q9HAV0 340 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 TPSG1Q9NRR2 321 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 ANXA10Q9UJ72 324 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 OR2W1Q9Y3N9 320 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 NUBP2Q9Y5Y2 271 aa9.05□□□□□ -0.96
CLN3-257ENST00000637110 DYNC2H1Q8NCM8 4307 aaKnown RBP9.04□□□□□ -0.96
CLN3-257ENST00000637110 SEC14L6B5MCN3 397 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 SSX5O60225 188 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 FCGR3BO75015 233 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 CRYZL1O95825 349 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 IGHV3-11P01762 117 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 DUTP33316 252 aaKnown RBP9.04□□□□□ -0.96
CLN3-257ENST00000637110 RPS19P39019 145 aaKnown RBP9.04□□□□□ -0.96
CLN3-257ENST00000637110 TPPP2P59282 170 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 KRTAP10-11P60412 298 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 ZNF616Q08AN1 781 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 OR2B11Q5JQS5 317 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 CASC10Q5T4H9 136 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 PYHIN1Q6K0P9 492 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 ZNF645Q8N7E2 425 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 BEST4Q8NFU0 473 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 OR5T1Q8NG75 326 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 SLC25A38Q96DW6 304 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 S100A16Q96FQ6 103 aaKnown RBP9.04□□□□□ -0.96
CLN3-257ENST00000637110 C5orf30Q96GV9 206 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 ZMAT5Q9UDW3 170 aaKnown RBP9.04□□□□□ -0.96
CLN3-257ENST00000637110 SPATA2Q9UM82 520 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 PRELID3BQ9Y3B1 194 aa9.04□□□□□ -0.96
CLN3-257ENST00000637110 STAB2Q8WWQ8 2551 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 A0A0A6YYH2 397 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 LCE6AA0A183 80 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 A6NJ64 397 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 MPPED1O15442 326 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 TMEM127O75204 238 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 SLC22A5O76082 557 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 HLA-DQB1P01920 261 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 TRGV3P03979 118 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 OR8U8P0C7N1 319 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 EGR2P11161 476 aaPredicted RBP9.03□□□□□ -0.96
CLN3-257ENST00000637110 DGCR2P98153 550 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 EGFEM1PQ0D2K5 195 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 PJVKQ0ZLH3 352 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 AKIRIN2Q53H80 203 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 TMEM177Q53S58 311 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 C9orf66Q5T8R8 295 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 KCTD9Q7L273 389 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 GVQW1Q8N7I0 195 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 SAMD12Q8N8I0 201 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 MUC7Q8TAX7 377 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 ALX4Q9H161 411 aaPredicted RBP9.03□□□□□ -0.96
CLN3-257ENST00000637110 AUNIPQ9H7T9 357 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 IFT46Q9NQC8 304 aa9.03□□□□□ -0.96
CLN3-257ENST00000637110 MRPS7Q9Y2R9 242 aaKnown RBP9.03□□□□□ -0.96
CLN3-257ENST00000637110 RBMX2Q9Y388 322 aaKnown RBP9.03□□□□□ -0.96
CLN3-257ENST00000637110 MEIS3P1A6NDR6 274 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 LINC00473A8K010 186 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 ARPC1BO15143 372 aaKnown RBP9.02□□□□□ -0.97
CLN3-257ENST00000637110 SOX15O60248 233 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 ACTL6BO94805 426 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 IGLV2-23P01705 113 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 PTHLHP12272 177 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 FCGR2CP31995 323 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 CRIP2P52943 208 aaPredicted RBP9.02□□□□□ -0.97
CLN3-257ENST00000637110 KIAA0141Q14154 515 aaPredicted RBP9.02□□□□□ -0.97
CLN3-257ENST00000637110 TNXAQ16473 311 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 UBE2NLQ5JXB2 153 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 TMEM69Q5SWH9 247 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 IDO2Q6ZQW0 420 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 HOGA1Q86XE5 327 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 OSR1Q8TAX0 266 aaPredicted RBP9.02□□□□□ -0.97
CLN3-257ENST00000637110 MYOZ3Q8TDC0 251 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 SECTM1Q8WVN6 248 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 TCTEX1D2Q8WW35 142 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 ACOT12Q8WYK0 555 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 TAS2R8Q9NYW2 309 aa9.02□□□□□ -0.97
CLN3-257ENST00000637110 IGKV1D-13A0A0B4J2D9 117 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 C13orf42A0A1B0GVH6 325 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 SRRM4A7MD48 611 aaKnown RBP9.01□□□□□ -0.97
CLN3-257ENST00000637110 LINC01619G3V211 115 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 I3L521 148 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 CRYGBP07316 175 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 LGALS1P09382 135 aaKnown RBP9.01□□□□□ -0.97
CLN3-257ENST00000637110 APELAP0DMC3 54 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 IGKV1-13P0DP09 117 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 ECI1P42126 302 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 CBX5P45973 191 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 FXYD4P59646 89 aa9.01□□□□□ -0.97
CLN3-257ENST00000637110 UBE2KP61086 200 aa9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms