RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 CYB561P49447 251 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 RPL27P61353 136 aaKnown RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 MEF2CQ06413 473 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 LRRC75BQ2VPJ9 315 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 DEFB134Q4QY38 66 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 DGAT2L6Q6ZPD8 337 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 VSTM2AQ8TAG5 236 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 ZNF721Q8TF20 911 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 PHF7Q9BWX1 381 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 COMMD5Q9GZQ3 224 aa5.81□□□□□ -1.48
SCN1A-213ENST00000636759 PHPT1Q9NRX4 125 aaPredicted RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 RALYQ9UKM9 306 aaKnown RBP5.81□□□□□ -1.48
SCN1A-213ENST00000636759 A0A1W2PQU0 124 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 FAM181BA6NEQ2 426 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 F2RL2O00254 374 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 IGKV1D-16P01601 117 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 ASAH2BP0C7U1 165 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 CRYBB3P26998 211 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 SRD5A2P31213 254 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 RNASEKQ6P5S7 137 aaKnown RBP5.8□□□□□ -1.48
SCN1A-213ENST00000636759 MOB1BQ7L9L4 216 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 MMD2Q8IY49 270 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 BOD1L2Q8IYS8 172 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 ZNF525Q8N782 197 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 TAF15Q92804 592 aaKnown RBP eCLIP5.8□□□□□ -1.48
SCN1A-213ENST00000636759 STRADBQ9C0K7 418 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 PSENENQ9NZ42 101 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 ERRFI1Q9UJM3 462 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-213ENST00000636759 TRIOO75962 3097 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 PHF3Q92576 2039 aaKnown RBP5.8□□□□□ -1.48
SCN1A-213ENST00000636759 H3BRM9 83 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 SLC17A3O00476 420 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 NKX2-2O95096 273 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 NAPSAO96009 420 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 HLA-DQA1P01909 254 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 CT62P0C5K7 136 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 IAPPP10997 89 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 SSTR5P35346 364 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM97Q5BJF2 176 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 BRICD5Q6PL45 260 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 DHRS13Q6UX07 377 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 RNF144BQ7Z419 303 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 WDR5BQ86VZ2 330 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 C1orf147Q96MC9 270 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-213ENST00000636759 FAM110AQ9BQ89 295 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 TP73-AS1Q9UF72 201 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 THADAQ6YHU6 1953 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-213ENST00000636759 TSPAN13O95857 204 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 CLPSP04118 112 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 FAM53BQ14153 422 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 PRICKLE4Q2TBC4 344 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 DMRTC1Q5HYR2 192 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 DCAF12Q5T6F0 453 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 OR5AS1Q8N127 324 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 RAB37Q96AX2 223 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 ZNF501Q96CX3 271 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-213ENST00000636759 OR4C12Q96R67 309 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 SFXN3Q9BWM7 321 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 CRIM1Q9NZV1 1036 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 CLCF1Q9UBD9 225 aa5.8□□□□□ -1.48
SCN1A-213ENST00000636759 ARHGEF17Q96PE2 2063 aaPredicted RBP5.8□□□□□ -1.48
SCN1A-213ENST00000636759 IGLV1-36A0A0B4J1U3 117 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 PIGBOS1A0A0B4J2F0 54 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 hDV102S1A0JD36 115 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 PRSS38A1L453 326 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 TGFBR3LH3BV60 316 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 GNG4P50150 75 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 LGALS4P56470 323 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 GNB1P62873 340 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 IGFBP7Q16270 282 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 NNATQ16517 81 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 TBC1D26Q86UD7 250 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 SMIM20Q8N5G0 67 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 OR10G6Q8NH81 332 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 OR2T6Q8NHC8 308 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 CT55Q8WUE5 264 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 NAT6Q93015 286 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 OR8B2Q96RD0 313 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 LIME1Q9H400 295 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 GP6Q9HCN6 339 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 PNRC2Q9NPJ4 139 aaKnown RBP5.79□□□□□ -1.48
SCN1A-213ENST00000636759 SERTAD4Q9NUC0 356 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 SRSF10O75494 262 aaKnown RBP5.79□□□□□ -1.48
SCN1A-213ENST00000636759 CA1P00915 261 aaPredicted RBP5.79□□□□□ -1.48
SCN1A-213ENST00000636759 HLA-DRB1P01911 266 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 CELA3AP09093 270 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 SLC25A6P12236 298 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 CCL2P13500 99 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 GAGE5Q13069 117 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 GAGE6Q13070 117 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 EIF3IQ13347 325 aaKnown RBP5.79□□□□□ -1.48
SCN1A-213ENST00000636759 KISS1Q15726 138 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 SPANXN5Q5MJ07 72 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 TMEM164Q5U3C3 297 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 ODF3L1Q8IXM7 274 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 SMRP1Q8NCR6 262 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 OR8B3Q8NGG8 313 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 OR1F12Q8NHA8 337 aa5.79□□□□□ -1.48
SCN1A-213ENST00000636759 LSM10Q969L4 123 aaKnown RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms