RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 VAX1Q5SQQ9 334 aa14.09□□□□□ -0.15
CLN3-247ENST00000636351 DHRS11Q6UWP2 260 aa14.09□□□□□ -0.15
CLN3-247ENST00000636351 SLC35E3Q7Z769 313 aa14.09□□□□□ -0.15
CLN3-247ENST00000636351 FAM71E2Q8N5Q1 922 aa14.09□□□□□ -0.15
CLN3-247ENST00000636351 TMEM229BQ8NBD8 167 aa14.09□□□□□ -0.15
CLN3-247ENST00000636351 BORCS5Q969J3 196 aa14.09□□□□□ -0.15
CLN3-247ENST00000636351 TSNAXQ99598 290 aaKnown RBP14.09□□□□□ -0.15
CLN3-247ENST00000636351 HSD17B10Q99714 261 aaKnown RBP14.09□□□□□ -0.15
CLN3-247ENST00000636351 TINAGL1Q9GZM7 467 aaPredicted RBP14.09□□□□□ -0.15
CLN3-247ENST00000636351 LINC00473A8K010 186 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 SHOXO15266 292 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 FCGR3BO75015 233 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 RAB3DO95716 219 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 CRYZL1O95825 349 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 IGLV2-14P01704 120 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 MSMO1Q15800 293 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 C5orf64Q2M2E5 130 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 ZNF660Q6AZW8 331 aaPredicted RBP14.08□□□□□ -0.16
CLN3-247ENST00000636351 STEAP1BQ6NZ63 245 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 ZNF66Q6ZN08 573 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 ZBTB34Q8NCN2 500 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 GPHA2Q96T91 129 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 FBXL15Q9H469 300 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 ZNF107Q9UII5 783 aaPredicted RBP14.08□□□□□ -0.16
CLN3-247ENST00000636351 V9GYH0 126 aa14.08□□□□□ -0.16
CLN3-247ENST00000636351 RRHO14718 337 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 GSTZ1O43708 216 aaPredicted RBP14.07□□□□□ -0.16
CLN3-247ENST00000636351 RPL30P62888 115 aaKnown RBP14.07□□□□□ -0.16
CLN3-247ENST00000636351 CATR1Q13166 79 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 NSUN5P1Q3KNT7 163 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 AADACL3Q5VUY0 350 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 ZNF818PQ6ZRF7 136 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 REC114Q7Z4M0 266 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 CCDC190Q86UF4 302 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 FOXRED2Q8IWF2 684 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 NPBQ8NG41 125 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 OR6Q1Q8NGQ2 317 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 DDB2Q92466 427 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 RNF5Q99942 180 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 SOSTQ9BQB4 213 aa14.07□□□□□ -0.16
CLN3-247ENST00000636351 METTL1Q9UBP6 276 aaKnown RBP14.07□□□□□ -0.16
CLN3-247ENST00000636351 SLC25A17O43808 307 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 NDUFA3O95167 84 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 SPDEFO95238 335 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 PGAM2P15259 253 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 MEF2DQ14814 521 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 SCGB2B2Q4G0G5 96 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 OXLD1Q5BKU9 147 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 CMTM1Q8IZ96 169 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 MFSD4AQ8N468 514 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 ARRDC1Q8N5I2 433 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 OR4D10Q8NGI6 311 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 OR51H1Q8NH63 302 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 OR4S2Q8NH73 311 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 HSPB9Q9BQS6 159 aa14.06□□□□□ -0.16
CLN3-247ENST00000636351 IGHG2P01859 326 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 CD74P04233 296 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 AKAIN1P0CW23 69 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 S100GP29377 79 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 KIR2DS2P43631 304 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 PPP5CP53041 499 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 EIF4EBP1Q13541 118 aaPredicted RBP14.05□□□□□ -0.16
CLN3-247ENST00000636351 PSG5Q15238 335 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 PHLDA2Q53GA4 152 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 LIN54Q6MZP7 749 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 FAAP20Q6NZ36 180 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 CENPVQ7Z7K6 275 aaPredicted RBP14.05□□□□□ -0.16
CLN3-247ENST00000636351 Q8N402 240 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 MRAPQ8TCY5 172 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 NOL4LQ96MY1 436 aaPredicted RBP14.05□□□□□ -0.16
CLN3-247ENST00000636351 CLCC1Q96S66 551 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 LINC00527Q9UJ94 153 aa14.05□□□□□ -0.16
CLN3-247ENST00000636351 A6NHS1 94 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 DISC1C4P0D8 188 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 AP4M1O00189 453 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 GPR31O00270 319 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 FBXO24O75426 580 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 HLA-DRB1P01911 266 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 RLN1P04808 185 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 CD28P10747 220 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 PTBP1P26599 531 aaKnown RBP eCLIP14.04□□□□□ -0.16
CLN3-247ENST00000636351 GNRHRP30968 328 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 LGALS7P47929 136 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 ZNF79Q15937 498 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 TMEM177Q53S58 311 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 LPCAT3Q6P1A2 487 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 SLC38A6Q8IZM9 456 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 POC5Q8NA72 575 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 OR4C16Q8NGL9 310 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 ABHD5Q8WTS1 349 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 THAP7Q9BT49 309 aaPredicted RBP14.04□□□□□ -0.16
CLN3-247ENST00000636351 WNT10AQ9GZT5 417 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 PARP11Q9NR21 331 aa14.04□□□□□ -0.16
CLN3-247ENST00000636351 PLXNB1O43157 2135 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 ANKRD20A5PA0PJZ0 165 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 PSMB11A5LHX3 300 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 AP3S2P59780 193 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 CNPY1Q3B7I2 92 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 VMA21Q3ZAQ7 101 aa14.03□□□□□ -0.16
CLN3-247ENST00000636351 SPAG16Q8N0X2 631 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 105.5 ms