RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 CECR9P0C854 216 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 RNF151Q2KHN1 245 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 ZNF502Q8TBZ5 544 aa17.49■□□□□ 0.39
UPF1-207ENST00000599848 ITLN2Q8WWU7 325 aaPredicted RBP17.48■□□□□ 0.39
UPF1-207ENST00000599848 IGHV3OR16-10A0A075B7F0 116 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 SMUG1Q53HV7 270 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 GATAD1Q8WUU5 269 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 SOSTQ9BQB4 213 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 PRSS27Q9BQR3 290 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 GREM1O60565 184 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 IGKV3-11P04433 115 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 PMS2P11Q13670 270 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 NRTNQ99748 197 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 ERVS71-1P61550 626 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 TUBD1Q9UJT1 453 aa17.48■□□□□ 0.39
UPF1-207ENST00000599848 RGPD3A6NKT7 1758 aaPredicted RBP17.47■□□□□ 0.39
UPF1-207ENST00000599848 FAM216AQ8WUB2 273 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 CTHRC1Q96CG8 243 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 SGK494Q96LW2 274 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 DLK1P80370 383 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 INSL4Q14641 139 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 CLEC9AQ6UXN8 241 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 TNFRSF18Q9Y5U5 241 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 LINC00312Q9Y6C7 94 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 TRBV5-5A0A0J9YX44 114 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 MEIG1Q5JSS6 88 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 OR8A1Q8NGG7 326 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 ARPC1AQ92747 370 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 OR51M1Q9H341 326 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 MARCH11A6NNE9 402 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 RNF224P0DH78 156 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 LBHQ53QV2 105 aaPredicted RBP17.47■□□□□ 0.39
UPF1-207ENST00000599848 STPG2Q8N412 459 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 SLC25A28Q96A46 364 aa17.47■□□□□ 0.39
UPF1-207ENST00000599848 RBFOX2O43251 390 aaKnown RBP eCLIP17.46■□□□□ 0.39
UPF1-207ENST00000599848 FBXL7Q9UJT9 491 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 TCF19Q9Y242 345 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 LHFPL6Q9Y693 200 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 OR4C46A6NHA9 309 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 CD5P06127 495 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 ZNF345Q14585 488 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 IGHV2OR16-5A0A0B4J2B6 119 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 PGLYRP1O75594 196 aaPredicted RBP17.46■□□□□ 0.39
UPF1-207ENST00000599848 LGALS3P17931 250 aaKnown RBP17.46■□□□□ 0.39
UPF1-207ENST00000599848 FGFRL1Q8N441 504 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 RBKSQ9H477 322 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 LOC102723996A0A087X1L8 192 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 CA7P43166 264 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 TAS2R60P59551 318 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 FAM166AQ6J272 317 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 DYRK2Q92630 601 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 SIGLEC12Q96PQ1 595 aa17.46■□□□□ 0.39
UPF1-207ENST00000599848 IL11P20809 199 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 XAF1Q6GPH4 301 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 TCRBV4S1A1TA0A5B7 111 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 NUDT3O95989 172 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 LIMS1P48059 325 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 MFAP2P55001 183 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 CD69Q07108 199 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 MESP2Q0VG99 397 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 DUX3Q96PT4 197 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 LTBRP36941 435 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 C2orf83Q53S99 150 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 CYB5R2Q6BCY4 276 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 C21orf62Q9NYP8 219 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 CHCHD2Q9Y6H1 151 aaPredicted RBP17.45■□□□□ 0.38
UPF1-207ENST00000599848 CDX1P47902 265 aaPredicted RBP17.45■□□□□ 0.38
UPF1-207ENST00000599848 UCP3P55916 312 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 ACP7Q6ZNF0 438 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 POC1AQ8NBT0 407 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 PRELID3AQ96N28 172 aa17.45■□□□□ 0.38
UPF1-207ENST00000599848 PROB1E7EW31 1015 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 BTF3P20290 206 aaKnown RBP17.44■□□□□ 0.38
UPF1-207ENST00000599848 ATP6V0CP27449 155 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 TMEM177Q53S58 311 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 IL4P05112 153 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 SCTP09683 121 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 PLXNB2O15031 1838 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 BCL2P10415 239 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 ASIPP42127 132 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 COTL1Q14019 142 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 IBA57Q5T440 356 aaKnown RBP17.44■□□□□ 0.38
UPF1-207ENST00000599848 STHQ8IWL8 128 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 NEUROG3Q9Y4Z2 214 aa17.44■□□□□ 0.38
UPF1-207ENST00000599848 HLA-DQA1P01909 254 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 CEBPDP49716 269 aaPredicted RBP17.43■□□□□ 0.38
UPF1-207ENST00000599848 IGSF11Q5DX21 431 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 COLCA1Q6ZS62 124 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 HDHD3Q9BSH5 251 aaPredicted RBP17.43■□□□□ 0.38
UPF1-207ENST00000599848 RPRMQ9NS64 109 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 UBE2DNLQ8IWF7 75 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 IMMP1LQ96LU5 166 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 DNAJC13O75165 2243 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 A0A1B0GVG6 124 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 LEPP41159 167 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 TBR1Q16650 682 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 TMEM88Q6PEY1 159 aa17.43■□□□□ 0.38
UPF1-207ENST00000599848 IFITM10A6NMD0 228 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 IGKV1D-33P01593 117 aa17.42■□□□□ 0.38
UPF1-207ENST00000599848 IGKV1-33P01594 117 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms