RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 TMEM229BQ8NBD8 167 aa11.18□□□□□ -0.62
SHKBP1-217ENST00000598558 OR6F1Q8NGZ6 308 aa11.18□□□□□ -0.62
SHKBP1-217ENST00000598558 ADTRPQ96IZ2 230 aa11.18□□□□□ -0.62
SHKBP1-217ENST00000598558 CITED2Q99967 270 aaPredicted RBP11.18□□□□□ -0.62
SHKBP1-217ENST00000598558 NDUFA13Q9P0J0 144 aa11.18□□□□□ -0.62
SHKBP1-217ENST00000598558 METTL1Q9UBP6 276 aaKnown RBP11.18□□□□□ -0.62
SHKBP1-217ENST00000598558 GSTZ1O43708 216 aaPredicted RBP11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 SLC25A17O43808 307 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 FCGR3BO75015 233 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 CRYZL1O95825 349 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 CX3CL1P78423 397 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 CD83Q01151 205 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 MSMO1Q15800 293 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 ZNF79Q15937 498 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 FAAP20Q6NZ36 180 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 KCTD9Q7L273 389 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 STPG2Q8N412 459 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 OR6Q1Q8NGQ2 317 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 C15orf40Q8WUR7 153 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 TCTEX1D2Q8WW35 142 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 MRGPRFQ96AM1 343 aa11.17□□□□□ -0.62
SHKBP1-217ENST00000598558 TRRAPQ9Y4A5 3859 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 G3V318 75 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 ARPC1BO15143 372 aaKnown RBP11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 ATP6V0E1O15342 81 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 RAMP3O60896 148 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 PGLYRP1O75594 196 aaPredicted RBP11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 LGALS7P47929 136 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 HERV-K104P61576 105 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 TSPAN5P62079 268 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 MRPS10P82664 201 aaKnown RBP11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 TAGLNQ01995 201 aaKnown RBP11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 CFHR3Q02985 330 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 ZNF66Q6ZN08 573 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 LCNL1Q6ZST4 164 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 LHFPL1Q86WI0 220 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 VKORC1L1Q8N0U8 176 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 ZBTB34Q8NCN2 500 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 HARBI1Q96MB7 349 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 TSNAXQ99598 290 aaKnown RBP11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 HSD17B10Q99714 261 aaKnown RBP11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 OR51J1Q9H342 316 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 KIAA1456Q9P272 454 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 WSB1Q9Y6I7 421 aa11.16□□□□□ -0.62
SHKBP1-217ENST00000598558 PSMB11A5LHX3 300 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 AP4M1O00189 453 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 SHOXO15266 292 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 FBXO24O75426 580 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 RAB3DO95716 219 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 TSPAN15O95858 294 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 IGF1P05019 195 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 RRASP10301 218 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 RTL8BQ17RB0 113 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 C19orf54Q5BKX5 351 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 RNASE10Q5GAN6 216 aaKnown RBP11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 STEAP1BQ6NZ63 245 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 IDO2Q6ZQW0 420 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 C18orf65Q6ZTR6 163 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 RSRP1Q9BUV0 290 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 PARP11Q9NR21 331 aa11.15□□□□□ -0.62
SHKBP1-217ENST00000598558 ANKRD20A5PA0PJZ0 165 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 SPDEFO95238 335 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 CA2P00918 260 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 PPIFP30405 207 aaKnown RBP11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 UCP3P55916 312 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 TAS2R19P59542 299 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 UBE2KP61086 200 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 SSBP1Q04837 148 aaKnown RBP11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 PLGLAQ15195 96 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 PHLDA2Q53GA4 152 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 ACTBL2Q562R1 376 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 FOXRED2Q8IWF2 684 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 OR51H1Q8NH63 302 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 CHPT1Q8WUD6 406 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 TRIM63Q969Q1 353 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 THAP7Q9BT49 309 aaPredicted RBP11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 FAM103A1Q9BTL3 118 aaKnown RBP11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 RABL2AQ9UBK7 228 aaPredicted RBP11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 RABL2BQ9UNT1 228 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 PRELID3BQ9Y3B1 194 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 NUBP2Q9Y5Y2 271 aa11.14□□□□□ -0.63
SHKBP1-217ENST00000598558 GPR31O00270 319 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 KCNAB3O43448 404 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 SOX15O60248 233 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 SAA1P0DJI8 122 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 PI3P19957 117 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 TBPP20226 339 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 S100A5P33763 92 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 ETV6P41212 452 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 NSUN5P1Q3KNT7 163 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 ZNF585BQ52M93 769 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 PYDC2Q56P42 97 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 PRR31Q5SQ13 230 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 ZNF562Q6V9R5 426 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 PPP1R27Q86WC6 154 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 SPAG16Q8N0X2 631 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 OR4C16Q8NGL9 310 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 SGMS2Q8NHU3 365 aa11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 OSR1Q8TAX0 266 aaPredicted RBP11.13□□□□□ -0.63
SHKBP1-217ENST00000598558 SDHCQ99643 169 aaPredicted RBP11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms