RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 OR2W1Q9Y3N9 320 aa11.87□□□□□ -0.51
TRIM28-203ENST00000593582 TRAV18A0A075B6X5 111 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 WI2-2373I1.2A0A1W2PRP0 233 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 SEC14L6B5MCN3 397 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 J3QRK9 145 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 AIREO43918 545 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 SSX5O60225 188 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 SLC22A5O76082 557 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 IGLV2-23P01705 113 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 DUTP33316 252 aaKnown RBP11.86□□□□□ -0.51
TRIM28-203ENST00000593582 TMEM177Q53S58 311 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 DEFB121Q5J5C9 76 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 C9orf66Q5T8R8 295 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 ZNF645Q8N7E2 425 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 SLA2Q9H6Q3 261 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 DIABLOQ9NR28 239 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 SPATA2Q9UM82 520 aa11.86□□□□□ -0.51
TRIM28-203ENST00000593582 ARPC1BO15143 372 aaKnown RBP11.85□□□□□ -0.51
TRIM28-203ENST00000593582 CRYZL1O95825 349 aa11.85□□□□□ -0.51
TRIM28-203ENST00000593582 HLA-DQB1P01920 261 aa11.85□□□□□ -0.51
TRIM28-203ENST00000593582 ARPC4P59998 168 aa11.85□□□□□ -0.51
TRIM28-203ENST00000593582 DGCR2P98153 550 aa11.85□□□□□ -0.51
TRIM28-203ENST00000593582 PJVKQ0ZLH3 352 aa11.85□□□□□ -0.51
TRIM28-203ENST00000593582 DDB2Q92466 427 aa11.85□□□□□ -0.51
TRIM28-203ENST00000593582 MS4A10Q96PG2 267 aa11.85□□□□□ -0.51
TRIM28-203ENST00000593582 SRRM4A7MD48 611 aaKnown RBP11.84□□□□□ -0.51
TRIM28-203ENST00000593582 LINC00473A8K010 186 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 RAMP3O60896 148 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 TUSC2O75896 110 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 CRYGBP07316 175 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 TPPP2P59282 170 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 UBE2KP61086 200 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 VMA21Q3ZAQ7 101 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 BEST4Q8NFU0 473 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 OSR1Q8TAX0 266 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-203ENST00000593582 YIPF6Q96EC8 236 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 DCUN1D5Q9BTE7 237 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 ALX4Q9H161 411 aaPredicted RBP11.84□□□□□ -0.51
TRIM28-203ENST00000593582 PRELID3BQ9Y3B1 194 aa11.84□□□□□ -0.51
TRIM28-203ENST00000593582 TRGV3P03979 118 aa11.83□□□□□ -0.52
TRIM28-203ENST00000593582 LGALS1P09382 135 aaKnown RBP11.83□□□□□ -0.52
TRIM28-203ENST00000593582 TGFBR1P36897 503 aa11.83□□□□□ -0.52
TRIM28-203ENST00000593582 LSM3P62310 102 aaKnown RBP11.83□□□□□ -0.52
TRIM28-203ENST00000593582 SSBP2P81877 361 aaPredicted RBP11.83□□□□□ -0.52
TRIM28-203ENST00000593582 DCTN2Q13561 401 aaKnown RBP11.83□□□□□ -0.52
TRIM28-203ENST00000593582 ASPHD1Q5U4P2 390 aa11.83□□□□□ -0.52
TRIM28-203ENST00000593582 KCTD9Q7L273 389 aa11.83□□□□□ -0.52
TRIM28-203ENST00000593582 GVQW1Q8N7I0 195 aa11.83□□□□□ -0.52
TRIM28-203ENST00000593582 TEX45Q8NA69 505 aa11.83□□□□□ -0.52
TRIM28-203ENST00000593582 S100A16Q96FQ6 103 aaKnown RBP11.83□□□□□ -0.52
TRIM28-203ENST00000593582 TMEM68Q96MH6 324 aa11.83□□□□□ -0.52
TRIM28-203ENST00000593582 AUNIPQ9H7T9 357 aa11.83□□□□□ -0.52
TRIM28-203ENST00000593582 ZNF355PQ9NSJ1 428 aa11.83□□□□□ -0.52
TRIM28-203ENST00000593582 MRPS7Q9Y2R9 242 aaKnown RBP11.83□□□□□ -0.52
TRIM28-203ENST00000593582 RBMX2Q9Y388 322 aaKnown RBP11.83□□□□□ -0.52
TRIM28-203ENST00000593582 IGKV1D-13A0A0B4J2D9 117 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 LINC01619G3V211 115 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 H3BUA1 57 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 XRCC3O43542 346 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 FCGR3BO75015 233 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 IGKV1-13P0DP09 117 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 RPS19P39019 145 aaKnown RBP11.82□□□□□ -0.52
TRIM28-203ENST00000593582 CBX5P45973 191 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 INSL3P51460 131 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 UBE2NLQ5JXB2 153 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 OVCH2Q7RTZ1 564 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 HOGA1Q86XE5 327 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 POC5Q8NA72 575 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 OR5T1Q8NG75 326 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 HSD17B10Q99714 261 aaKnown RBP11.82□□□□□ -0.52
TRIM28-203ENST00000593582 SCOCQ9UIL1 159 aa11.82□□□□□ -0.52
TRIM28-203ENST00000593582 CREBL2O60519 120 aaPredicted RBP11.81□□□□□ -0.52
TRIM28-203ENST00000593582 IGLV2-14P01704 120 aa11.81□□□□□ -0.52
TRIM28-203ENST00000593582 IGHV3-11P01762 117 aa11.81□□□□□ -0.52
TRIM28-203ENST00000593582 FCGR2CP31995 323 aa11.81□□□□□ -0.52
TRIM28-203ENST00000593582 PRSS8Q16651 343 aa11.81□□□□□ -0.52
TRIM28-203ENST00000593582 IDO2Q6ZQW0 420 aa11.81□□□□□ -0.52
TRIM28-203ENST00000593582 SAMD12Q8N8I0 201 aa11.81□□□□□ -0.52
TRIM28-203ENST00000593582 PHB2Q99623 299 aa11.81□□□□□ -0.52
TRIM28-203ENST00000593582 IGHV4OR15-8A0A075B7B6 117 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 A0A087WW49 117 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 A0A0G2JLM5 398 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 C13orf42A0A1B0GVH6 325 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 MSGN1A6NI15 193 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 OVOL1O14753 267 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 ACTL6BO94805 426 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 HSPB1P04792 205 aaKnown RBP11.8□□□□□ -0.52
TRIM28-203ENST00000593582 AADACP22760 399 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 ECI1P42126 302 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 RPL30P62888 115 aaKnown RBP11.8□□□□□ -0.52
TRIM28-203ENST00000593582 TNXAQ16473 311 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 OR2B11Q5JQS5 317 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 ZNF429Q86V71 674 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 OR13F1Q8NGS4 319 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 OR4S2Q8NH73 311 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 TCTEX1D2Q8WW35 142 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 ACOT12Q8WYK0 555 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 DCUN1D4Q92564 292 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 SLC25A46Q96AG3 418 aa11.8□□□□□ -0.52
TRIM28-203ENST00000593582 RHOVQ96L33 236 aa11.8□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms