RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 DUX5Q96PT3 197 aa12.49□□□□□ -0.41
SS18-216ENST00000580751 PHB2Q99623 299 aa12.49□□□□□ -0.41
SS18-216ENST00000580751 OR51J1Q9H342 316 aa12.49□□□□□ -0.41
SS18-216ENST00000580751 LIN7CQ9NUP9 197 aaKnown RBP12.49□□□□□ -0.41
SS18-216ENST00000580751 SAA2-SAA4A0A096LPE2 208 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 A0A1W2PPI3 338 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 H0Y980 276 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 SAA2P0DJI9 122 aaPredicted RBP12.48□□□□□ -0.41
SS18-216ENST00000580751 PI3P19957 117 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 BCAP31P51572 246 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 SUPT4H1P63272 117 aaKnown RBP12.48□□□□□ -0.41
SS18-216ENST00000580751 PPP1R1AQ13522 171 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 EIF4EBP1Q13541 118 aaPredicted RBP12.48□□□□□ -0.41
SS18-216ENST00000580751 DIAPH2-AS1Q14236 149 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 PHLDA2Q53GA4 152 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 LIAT1Q6ZQX7 453 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 ODF3L1Q8IXM7 274 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 LRTM2Q8N967 370 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 CD300LFQ8TDQ1 290 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 CHIAQ9BZP6 476 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 TNFRSF19Q9NS68 423 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 SDHAF2Q9NX18 166 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 PITPNC1Q9UKF7 332 aa12.48□□□□□ -0.41
SS18-216ENST00000580751 COL6A5A8TX70 2615 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 IGHV1-3A0A0C4DH29 117 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 C3orf85A0A1B0GTC6 90 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 TIMM23O14925 209 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 RPA2P15927 270 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 VAMP1P23763 118 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 REG1BP48304 166 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 ZNF833PQ6ZTB9 187 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 TBC1D26Q86UD7 250 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 C12orf45Q8N5I9 185 aaPredicted RBP12.47□□□□□ -0.41
SS18-216ENST00000580751 CAPSLQ8WWF8 208 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 ASB13Q8WXK3 278 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 IL22RA2Q969J5 263 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 ABHD14BQ96IU4 210 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 RAB18Q9NP72 206 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 TCF19Q9Y242 345 aa12.47□□□□□ -0.41
SS18-216ENST00000580751 A0A1B0GVG6 124 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 DUXBA0A1W2PPF3 345 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 HMX3A6NHT5 357 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 RBFOX2O43251 390 aaKnown RBP eCLIP12.46□□□□□ -0.41
SS18-216ENST00000580751 FAM106CPP0CH98 169 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 HLA-GP17693 338 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 KIR2DS2P43631 304 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 THBS3P49746 956 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 RAB13P51153 203 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 RPL15P61313 204 aaKnown RBP12.46□□□□□ -0.41
SS18-216ENST00000580751 RRAS2P62070 204 aaPredicted RBP12.46□□□□□ -0.41
SS18-216ENST00000580751 HABP2Q14520 560 aaPredicted RBP12.46□□□□□ -0.41
SS18-216ENST00000580751 MOB3BQ86TA1 216 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 CADM3Q8N126 398 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 PIFOQ8TCI5 191 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 CFHR4Q92496 578 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 ZNF251Q9BRH9 671 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 SEC22CQ9BRL7 303 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 MED28Q9H204 178 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 BEX1Q9HBH7 125 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 RNF150Q9ULK6 438 aa12.46□□□□□ -0.41
SS18-216ENST00000580751 SSNA1O43805 119 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 GPR137BO60478 399 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 ATG12O94817 140 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 UCP1P25874 307 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 DUTP33316 252 aaKnown RBP12.45□□□□□ -0.42
SS18-216ENST00000580751 SRSF2Q01130 221 aaKnown RBP12.45□□□□□ -0.42
SS18-216ENST00000580751 CBX3Q13185 183 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 LY6EQ16553 131 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 THNSL2Q86YJ6 484 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 LGI3Q8N145 548 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 TMEM56Q96MV1 263 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 TMEM222Q9H0R3 208 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 PRELID3BQ9Y3B1 194 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 TMEM56-RWDD3S4R434 201 aa12.45□□□□□ -0.42
SS18-216ENST00000580751 A6NDX4 124 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 DBX1A6NMT0 343 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 FAM90A9PA6NNJ1 464 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 CDS2O95674 445 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 CRYBA1P05813 215 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 RRASP10301 218 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 CD1BP29016 333 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 TMEM187Q14656 261 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 RPL39P5Q59GN2 51 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 GLYATL2Q8WU03 294 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 TMEM158Q8WZ71 300 aa12.44□□□□□ -0.42
SS18-216ENST00000580751 MRPL20Q9BYC9 149 aaKnown RBP12.44□□□□□ -0.42
SS18-216ENST00000580751 FAM181BA6NEQ2 426 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 M0R1X1 148 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 PROP1O75360 226 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 SERPINE2P07093 398 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 SNRNP70P08621 437 aaKnown RBP12.43□□□□□ -0.42
SS18-216ENST00000580751 OR5AC1P0C628 307 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 SULT1A3P0DMM9 295 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 SULT1A4P0DMN0 295 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 DHRS7BQ6IAN0 325 aaPredicted RBP12.43□□□□□ -0.42
SS18-216ENST00000580751 LIN54Q6MZP7 749 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 C16orf82Q7Z2V1 217 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 OR52B4Q8NGK2 314 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 NABP2Q9BQ15 211 aa12.43□□□□□ -0.42
SS18-216ENST00000580751 AIFM2Q9BRQ8 373 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms