RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 NMES1Q9C002 83 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 COA4Q9NYJ1 87 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 ZNRD1Q9P1U0 126 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 MMP24Q9Y5R2 645 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 PDZD2O15018 2839 aa12.36□□□□□ -0.43
SS18-215ENST00000580642 A0A1B0GU03 582 aa12.35□□□□□ -0.43
SS18-215ENST00000580642 RAMP3O60896 148 aa12.35□□□□□ -0.43
SS18-215ENST00000580642 CXCL3P19876 107 aa12.35□□□□□ -0.43
SS18-215ENST00000580642 ERVK-16P61578 105 aa12.35□□□□□ -0.43
SS18-215ENST00000580642 NMSQ5H8A3 153 aa12.35□□□□□ -0.43
SS18-215ENST00000580642 GGNBP1Q5YKI7 109 aa12.35□□□□□ -0.43
SS18-215ENST00000580642 LYZL2Q7Z4W2 148 aa12.35□□□□□ -0.43
SS18-215ENST00000580642 FLYWCH2Q96CP2 140 aaKnown RBP12.35□□□□□ -0.43
SS18-215ENST00000580642 C2orf50Q96LR7 162 aa12.35□□□□□ -0.43
SS18-215ENST00000580642 ITPR2Q14571 2701 aa12.35□□□□□ -0.43
SS18-215ENST00000580642 NBPF19A0A087WUL8 3843 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 MED13LQ71F56 2210 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 A0A1W2PPI3 338 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 C5orf51A6NDU8 294 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 SNAPC5O75971 98 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 IGKV1-39P01597 117 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 IGKV1D-39P04432 117 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 HOXB5P09067 269 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 SAA4P35542 130 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 DYNLT3P51808 116 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 AKR1C2P52895 323 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 DLX1P56177 255 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 H2BFSP57053 126 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 FGL1Q08830 312 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 AANATQ16613 207 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 THNSL2Q86YJ6 484 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 VSTM2AQ8TAG5 236 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 NANPQ8TBE9 248 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 SEC22AQ96IW7 307 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 ST6GAL2Q96JF0 529 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 PDCD10Q9BUL8 212 aa12.34□□□□□ -0.43
SS18-215ENST00000580642 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.34□□□□□ -0.431e-8■■■■□ 23.5
SS18-215ENST00000580642 CSMD2Q7Z408 3487 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 MARCH11A6NNE9 402 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 H7C2Y5 167 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 ADAP1O75689 374 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 S1PR2O95136 353 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 CRYZL1O95825 349 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 P0C879 139 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 BRS3P32247 399 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 REG1BP48304 166 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 LDLRAD2Q5SZI1 272 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 THOC7Q6I9Y2 204 aaKnown RBP12.33□□□□□ -0.44
SS18-215ENST00000580642 OR4A5Q8NH83 315 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 R3HDM4Q96D70 268 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 MEGF9Q9H1U4 602 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 PRR13Q9NZ81 148 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 ABCA2Q9BZC7 2435 aa12.33□□□□□ -0.44
SS18-215ENST00000580642 TRAV40A0A0B4J280 105 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 C13orf42A0A1B0GVH6 325 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 CD5LO43866 347 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 SPDEFO95238 335 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 FSHBP01225 129 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 IGKV1-5P01602 117 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 LINC00205P59089 165 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 CD83Q01151 205 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 IL15RAQ13261 267 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 EBI3Q14213 229 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 DIAPH2-AS1Q14236 149 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 SMCO1Q147U7 214 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 C2orf68Q2NKX9 166 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 IAH1Q2TAA2 248 aaPredicted RBP12.32□□□□□ -0.44
SS18-215ENST00000580642 AARDQ4LEZ3 155 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 OR2B11Q5JQS5 317 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 SPNS3Q6ZMD2 512 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 C9orf139Q6ZV77 190 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 H2BFWTQ7Z2G1 175 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 MOB3BQ86TA1 216 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 PIP4P2Q8N4L2 257 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 MAPK1IP1LQ8NDC0 245 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 OR8H1Q8NGG4 311 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 RNASE11Q8TAA1 199 aaKnown RBP12.32□□□□□ -0.44
SS18-215ENST00000580642 CFHR4Q92496 578 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 AJUBAQ96IF1 538 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 RHOVQ96L33 236 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 TSNAXQ99598 290 aaKnown RBP12.32□□□□□ -0.44
SS18-215ENST00000580642 MS4A7Q9GZW8 240 aaPredicted RBP12.32□□□□□ -0.44
SS18-215ENST00000580642 ARHGAP32A7KAX9 2087 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 CCDC168Q8NDH2 2452 aa12.32□□□□□ -0.44
SS18-215ENST00000580642 FAM25EA8MYX2 175 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 FAM90A26D6RGX4 464 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 TIMM23O14925 209 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 SHOXO15266 292 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 LY86O95711 162 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 KRASP01116 189 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 FAM106CPP0CH98 169 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 PET100P0DJ07 73 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 PRB3Q04118 309 aaPredicted RBP12.31□□□□□ -0.44
SS18-215ENST00000580642 SSX2Q16385 188 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 LHFPL4Q7Z7J7 247 aa12.31□□□□□ -0.44
SS18-215ENST00000580642 CIARTQ8N365 385 aaPredicted RBP12.31□□□□□ -0.44
SS18-215ENST00000580642 ZBTB8BQ8NAP8 495 aaPredicted RBP12.31□□□□□ -0.44
SS18-215ENST00000580642 FYTTD1Q96QD9 318 aaKnown RBP12.31□□□□□ -0.44
SS18-215ENST00000580642 RANBP3Q9H6Z4 567 aaPredicted RBP12.31□□□□□ -0.44
SS18-215ENST00000580642 RANGRFQ9HD47 186 aaPredicted RBP12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms