RNA–Protein interactions for RNA: ENST00000573584.5

NUP88-207, Transcript of nucleoporin 88, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP88, Length 2,916 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-207ENST00000573584 URB1O60287 2271 aaKnown RBP13.06□□□□□ -0.32
NUP88-207ENST00000573584 A0A1W2PNU3 283 aaPredicted RBP13.06□□□□□ -0.32
NUP88-207ENST00000573584 MARCH11A6NNE9 402 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 DEFB108AA8MXU0 73 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 LYZL6O75951 148 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 TGFBR3Q03167 851 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 Q3ZCU0 254 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 GCSAMLQ5JQS6 135 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 TMEM164Q5U3C3 297 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 CST9LP1Q5W188 147 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 SPRR3Q9UBC9 169 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 TRAV38-1A0A0B4J264 116 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 MLNRO43193 412 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 FAM78BQ5VT40 261 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 LINC01551Q86U37 167 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 C11orf53Q8IXP5 236 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 MDS2Q8NDY4 140 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 TMEM18Q96B42 140 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 QTRT1Q9BXR0 403 aaKnown RBP13.06□□□□□ -0.32
NUP88-207ENST00000573584 PSG11Q9UQ72 335 aa13.06□□□□□ -0.32
NUP88-207ENST00000573584 COL6A3P12111 3177 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 TRGV5A0A0B4J1U4 118 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 C15orf62A8K5M9 175 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 ST8SIA5O15466 376 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 GALR2O43603 387 aaPredicted RBP13.05□□□□□ -0.32
NUP88-207ENST00000573584 PDE6DO43924 150 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 IGHV1-2P23083 117 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 CD1BP29016 333 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 Q8N7P7 452 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 NOL4LQ96MY1 436 aaPredicted RBP13.05□□□□□ -0.32
NUP88-207ENST00000573584 HSD17B10Q99714 261 aaKnown RBP13.05□□□□□ -0.32
NUP88-207ENST00000573584 IL17BQ9UHF5 180 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 MED13Q9UHV7 2174 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 SLC31A2O15432 143 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 NDUFB4O95168 129 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 EDDM3BP56851 147 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 GNB1P62873 340 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 LCN2P80188 198 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 ACP7Q6ZNF0 438 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 DIRC2Q96SL1 478 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 WDR83OSQ9Y284 106 aa13.05□□□□□ -0.32
NUP88-207ENST00000573584 PRRC2CQ9Y520 2896 aaKnown RBP13.04□□□□□ -0.32
NUP88-207ENST00000573584 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.04□□□□□ -0.32
NUP88-207ENST00000573584 A0A1W2PPV4 95 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 CD46P15529 392 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 ATP5G3P48201 142 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 RNFT1Q5M7Z0 435 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 C1orf210Q8IVY1 113 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 COL27A1Q8IZC6 1860 aaPredicted RBP13.04□□□□□ -0.32
NUP88-207ENST00000573584 OR13A1Q8NGR1 328 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 IL3RAP26951 378 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 MRPL41Q8IXM3 137 aaKnown RBP13.04□□□□□ -0.32
NUP88-207ENST00000573584 R3HDM4Q96D70 268 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 DERL1Q9BUN8 251 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 METRNQ9UJH8 293 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 WASF3Q9UPY6 502 aa13.04□□□□□ -0.32
NUP88-207ENST00000573584 TNRC18O15417 2968 aaPredicted RBP13.03□□□□□ -0.32
NUP88-207ENST00000573584 A0A0U1RQK1 487 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 ZNF320A2RRD8 509 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 NDUFB7P17568 137 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 CNN1P51911 297 aaKnown RBP13.03□□□□□ -0.32
NUP88-207ENST00000573584 GCNT2Q8N0V5 402 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 MISP3Q96FF7 219 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 GMPPAQ96IJ6 420 aaPredicted RBP13.03□□□□□ -0.32
NUP88-207ENST00000573584 OR9G9P0C7N8 305 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 CD82P27701 267 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 TAS2R60P59551 318 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 PRAMEF6Q5VXH4 476 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 DBX2Q6ZNG2 339 aa13.03□□□□□ -0.32
NUP88-207ENST00000573584 PATZ1Q9HBE1 687 aaKnown RBP13.03□□□□□ -0.32
NUP88-207ENST00000573584 TMPRSS2O15393 492 aa13.02□□□□□ -0.32
NUP88-207ENST00000573584 CD99P14209 185 aa13.02□□□□□ -0.32
NUP88-207ENST00000573584 ARG2P78540 354 aa13.02□□□□□ -0.32
NUP88-207ENST00000573584 FOXF2Q12947 444 aa13.02□□□□□ -0.32
NUP88-207ENST00000573584 LTC4SQ16873 150 aa13.02□□□□□ -0.32
NUP88-207ENST00000573584 WDR31Q8NA23 367 aa13.02□□□□□ -0.32
NUP88-207ENST00000573584 LURAP1Q96LR2 239 aa13.02□□□□□ -0.32
NUP88-207ENST00000573584 KCNIP2Q9NS61 270 aa13.02□□□□□ -0.32
NUP88-207ENST00000573584 CCKARP32238 428 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 USF2Q15853 346 aaPredicted RBP13.02□□□□□ -0.33
NUP88-207ENST00000573584 LBHQ53QV2 105 aaPredicted RBP13.02□□□□□ -0.33
NUP88-207ENST00000573584 WDR82Q6UXN9 313 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 PRR7Q8TB68 274 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 RAB1CQ92928 201 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 DCTN5Q9BTE1 182 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 NDUFAF3Q9BU61 184 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 CXXC4Q9H2H0 198 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 TRAPPC1Q9Y5R8 145 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 ZDBF2Q9HCK1 2354 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 NBEAQ8NFP9 2946 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 PGPEP1LA6NFU8 196 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 SPINT2O43291 252 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 C1QTNF9P0C862 333 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 PLPPR2Q96GM1 343 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 C2orf88Q9BSF0 95 aa13.02□□□□□ -0.33
NUP88-207ENST00000573584 FCGR3BO75015 233 aa13.01□□□□□ -0.33
NUP88-207ENST00000573584 SNRPCP09234 159 aaKnown RBP13.01□□□□□ -0.33
NUP88-207ENST00000573584 RPL15P61313 204 aaKnown RBP13.01□□□□□ -0.33
NUP88-207ENST00000573584 TMEM249Q2WGJ8 235 aa13.01□□□□□ -0.33
NUP88-207ENST00000573584 INO80CQ6PI98 192 aaPredicted RBP13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms