RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 RTL8BQ17RB0 113 aa11.71□□□□□ -0.53
VPS39-210ENST00000568357 PPP1R27Q86WC6 154 aa11.71□□□□□ -0.53
VPS39-210ENST00000568357 CASTOR1Q8WTX7 329 aa11.71□□□□□ -0.53
VPS39-210ENST00000568357 KCTD12Q96CX2 325 aaKnown RBP11.71□□□□□ -0.53
VPS39-210ENST00000568357 ADTRPQ96IZ2 230 aa11.71□□□□□ -0.53
VPS39-210ENST00000568357 RBMX2Q9Y388 322 aaKnown RBP11.71□□□□□ -0.53
VPS39-210ENST00000568357 SHOXO15266 292 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 GABARAPO95166 117 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 RRASP10301 218 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 AADACP22760 399 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 CBX5P45973 191 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 ALDH3B2P48448 385 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 TAS2R20P59543 309 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 EIF4EBP1Q13541 118 aaPredicted RBP11.7□□□□□ -0.54
VPS39-210ENST00000568357 FXYD3Q14802 87 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 MRGPRG-AS1Q2M3A8 158 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 TMEM69Q5SWH9 247 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 GPR107Q5VW38 600 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 FOXB2Q5VYV0 432 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 TMEM65Q6PI78 240 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 ZNF491Q8N8L2 437 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 LFNGQ8NES3 379 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 ABHD5Q8WTS1 349 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 RCC1LQ96I51 464 aaKnown RBP11.7□□□□□ -0.54
VPS39-210ENST00000568357 HARBI1Q96MB7 349 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 MRPS26Q9BYN8 205 aaKnown RBP11.7□□□□□ -0.54
VPS39-210ENST00000568357 GNB4Q9HAV0 340 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 NECAP2Q9NVZ3 263 aa11.7□□□□□ -0.54
VPS39-210ENST00000568357 A0A1W2PN81 502 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 FCGR3BO75015 233 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 SLC22A5O76082 557 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 CRYZL1O95825 349 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 CHRNA7P36544 502 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 RORCP51449 518 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 BRWD1-AS2P59051 145 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 TMEM267Q0VDI3 215 aaPredicted RBP11.69□□□□□ -0.54
VPS39-210ENST00000568357 AKIRIN2Q53H80 203 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 UNQ5815/PRO19632Q6UWF5 114 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 OR5AP2Q8NGF4 316 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 C4orf3Q8WVX3 66 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 UBE2E2Q96LR5 201 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 GPHA2Q96T91 129 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 CCL28Q9NRJ3 127 aa11.69□□□□□ -0.54
VPS39-210ENST00000568357 FOXA2Q9Y261 457 aaPredicted RBP11.69□□□□□ -0.54
VPS39-210ENST00000568357 HPGDSO60760 199 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 APOA1P02647 267 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 ELK1P19419 428 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 GNB1P62873 340 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 CBX3Q13185 183 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 ACTBL2Q562R1 376 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 OR2B11Q5JQS5 317 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 GRPEL2Q8TAA5 225 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 ACOT12Q8WYK0 555 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 ARPC1AQ92747 370 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 CMTM3Q96MX0 182 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 OR5B12Q96R08 314 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 TAS2R8Q9NYW2 309 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 ANAPC10Q9UM13 185 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 VSIG4Q9Y279 399 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 MRPS7Q9Y2R9 242 aaKnown RBP11.68□□□□□ -0.54
VPS39-210ENST00000568357 BIRC6Q9NR09 4857 aa11.68□□□□□ -0.54
VPS39-210ENST00000568357 I3L521 148 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 CNIH1O95406 144 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 DUS4LO95620 317 aaKnown RBP11.67□□□□□ -0.54
VPS39-210ENST00000568357 PPYP01298 95 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 NAT1P18440 290 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 PRSS3P35030 304 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 RFX2P48378 723 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 KRTAP10-11P60412 298 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 UBE2KP61086 200 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 CDK10Q15131 360 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 IDO2Q6ZQW0 420 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 KCTD9Q7L273 389 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 OVCH2Q7RTZ1 564 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 GPR141Q7Z602 305 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 LYSMD2Q8IV50 215 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 MFSD4AQ8N468 514 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 TCTEX1D1Q8N7M0 179 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 TEX45Q8NA69 505 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 OR11H1Q8NG94 326 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 OSR1Q8TAX0 266 aaPredicted RBP11.67□□□□□ -0.54
VPS39-210ENST00000568357 SECTM1Q8WVN6 248 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 GIMAP1Q8WWP7 306 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 MS4A10Q96PG2 267 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 HSD17B10Q99714 261 aaKnown RBP11.67□□□□□ -0.54
VPS39-210ENST00000568357 DCUN1D5Q9BTE7 237 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 IFT46Q9NQC8 304 aa11.67□□□□□ -0.54
VPS39-210ENST00000568357 EPPK1P58107 5090 aaKnown RBP11.66□□□□□ -0.54
VPS39-210ENST00000568357 SMIM31A0A1B0GVY4 71 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 PMP2P02689 132 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 RAB25P57735 213 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 RUNX1Q01196 453 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 FHL3Q13643 280 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 PRSS8Q16651 343 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 VMA21Q3ZAQ7 101 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 ASPHD1Q5U4P2 390 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 DHRS11Q6UWP2 260 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 OR5T1Q8NG75 326 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 OR5M8Q8NGP6 311 aa11.66□□□□□ -0.54
VPS39-210ENST00000568357 OR1N2Q8NGR9 330 aa11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms