RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 OR4C12Q96R67 309 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 NAT8Q9UHE5 227 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 PITPNC1Q9UKF7 332 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 LILRA1O75019 489 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 ZNF737O75373 536 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 FABP4P15090 132 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 SPANXN5Q5MJ07 72 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 FBXW9Q5XUX1 488 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 Q6P435 159 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 TAF15Q92804 592 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS4A-204ENST00000566354 AGMATQ9BSE5 352 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 SLC39A9Q9NUM3 307 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 TIMM9Q9Y5J7 89 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 PKD1L2Q7Z442 2459 aa11.14□□□□□ -0.63
VPS4A-204ENST00000566354 J3QT63 122 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 AQP7O14520 342 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 RHBDL1O75783 438 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 Q8NA96 180 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 NUDT10Q8NFP7 164 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 LHX4Q969G2 390 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 RBKSQ9H477 322 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 CDH20Q9HBT6 801 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 PGA5P0DJD9 388 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 TMEM241Q24JQ0 296 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 C4orf17Q53FE4 359 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 ZNF497Q6ZNH5 498 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 IL19Q9UHD0 177 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 TRAPPC2LQ9UL33 140 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 KCNS2Q9ULS6 477 aa11.13□□□□□ -0.63
VPS4A-204ENST00000566354 RNF212BA8MTL3 300 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 K7EP13 123 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 M0R143 59 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 CA6P23280 308 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 MEF2BQ02080 365 aaPredicted RBP11.12□□□□□ -0.63
VPS4A-204ENST00000566354 SLC38A11Q08AI6 406 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 CYP2G1PQ6ZSU1 146 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 CENPVQ7Z7K6 275 aaPredicted RBP11.12□□□□□ -0.63
VPS4A-204ENST00000566354 ZGRF1Q86YA3 2104 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 Q8IYB0 196 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 FGFRL1Q8N441 504 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 SMIM7Q9BQ49 75 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 SRD5A3Q9H8P0 318 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 TRAV39A0A0B4J263 110 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 WDR1O75083 606 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 ELLP55199 621 aaPredicted RBP11.12□□□□□ -0.63
VPS4A-204ENST00000566354 NCR3LG1Q68D85 454 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 TMEM14EPQ6UXP3 125 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 RPP25LQ8N5L8 163 aaKnown RBP11.12□□□□□ -0.63
VPS4A-204ENST00000566354 PACRGQ96M98 296 aaPredicted RBP11.12□□□□□ -0.63
VPS4A-204ENST00000566354 PRSS50Q9UI38 385 aa11.12□□□□□ -0.63
VPS4A-204ENST00000566354 UBE2L5PA0A1B0GUS4 154 aa11.11□□□□□ -0.63
VPS4A-204ENST00000566354 TMEM250H0YL14 139 aa11.11□□□□□ -0.63
VPS4A-204ENST00000566354 DRAM1Q8N682 238 aa11.11□□□□□ -0.63
VPS4A-204ENST00000566354 OR1K1Q8NGR3 316 aa11.11□□□□□ -0.63
VPS4A-204ENST00000566354 SARAFQ96BY9 339 aa11.11□□□□□ -0.63
VPS4A-204ENST00000566354 SNX22Q96L94 193 aa11.11□□□□□ -0.63
VPS4A-204ENST00000566354 HIST1H2BLQ99880 126 aa11.11□□□□□ -0.63
VPS4A-204ENST00000566354 PYGO2Q9BRQ0 406 aa11.11□□□□□ -0.63
VPS4A-204ENST00000566354 MBNL3Q9NUK0 354 aaKnown RBP11.11□□□□□ -0.63
VPS4A-204ENST00000566354 A0A1W2PR80 420 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 SMCO3A2RU48 225 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 C3orf80F5H4A9 247 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 SIRPB1O00241 398 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 KBTBD11O94819 623 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 OR2H2O95918 312 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 PFN1P07737 140 aaKnown RBP11.1□□□□□ -0.63
VPS4A-204ENST00000566354 FGF7P21781 194 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 PSMB3P49720 205 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 GAMTQ14353 236 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 ADIRFQ15847 76 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 ATP6V1FQ16864 119 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 FAM180AQ6UWF9 173 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 TMEM183AQ8IXX5 376 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 CISD2Q8N5K1 135 aaKnown RBP11.1□□□□□ -0.63
VPS4A-204ENST00000566354 OR4X1Q8NH49 305 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 TRIB1Q96RU8 372 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 RTL8AQ9BWD3 113 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 WIPI2Q9Y4P8 454 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 TDGF1P3P51864 188 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 BSXQ3C1V8 233 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 OR8G2PQ6IF36 304 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 TGIF2LYQ8IUE0 185 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 OR2D3Q8NGH3 330 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 HSPB7Q9UBY9 170 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 POLDIP2Q9Y2S7 368 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 ARHGAP21Q5T5U3 1957 aa11.1□□□□□ -0.63
VPS4A-204ENST00000566354 CLDN1O95832 211 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 IGKV1D-33P01593 117 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 IGKV1-33P01594 117 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 ERVK11-1P61568 191 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 MSMO1Q15800 293 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 WDR73Q6P4I2 378 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 C16orf82Q7Z2V1 217 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 NUFIP2Q7Z417 695 aaKnown RBP11.09□□□□□ -0.63
VPS4A-204ENST00000566354 ZBTB34Q8NCN2 500 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 CLCF1Q9UBD9 225 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 CTXND1A0A1B0GTU2 59 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 SH2D1BO14796 132 aa11.09□□□□□ -0.63
VPS4A-204ENST00000566354 PRR30Q53SZ7 412 aaPredicted RBP11.09□□□□□ -0.63
VPS4A-204ENST00000566354 SCCPDHQ8NBX0 429 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms