RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, human

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-222	ENST00000566083	TEX45	Q8NA69	505 aa		11.46	□□□□□ -0.57
CLN3-222	ENST00000566083	RCHY1	Q96PM5	261 aa		11.46	□□□□□ -0.57
CLN3-222	ENST00000566083	NDUFB11	Q9NX14	153 aa		11.46	□□□□□ -0.57
CLN3-222	ENST00000566083	RAB27B	O00194	218 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	MFNG	O00587	321 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	SCGN	O76038	276 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	SLC22A5	O76082	557 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	IGLV1-51	P01701	117 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	CRYGB	P07316	175 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	FRMD6-AS1	P0C7T7	363 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	GNB3	P16520	340 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	MAP2K4	P45985	399 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	FAM209B	Q5JX69	171 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	OR5T1	Q8NG75	326 aa		11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	OSR1	Q8TAX0	266 aa	Predicted RBP	11.45	□□□□□ -0.58
CLN3-222	ENST00000566083	TINAGL1	Q9GZM7	467 aa	Predicted RBP	11.45	□□□□□ -0.58
CLN3-222	ENST00000566083		A8MZ25	164 aa		11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	DTYMK	P23919	212 aa		11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	LINC00205	P59089	165 aa		11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	UBE2K	P61086	200 aa		11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	KLF5	Q13887	457 aa	Predicted RBP	11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	SGPP2	Q8IWX5	399 aa		11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	BVES	Q8NE79	360 aa		11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	MUC7	Q8TAX7	377 aa		11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	PHB2	Q99623	299 aa		11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	RSRP1	Q9BUV0	290 aa		11.44	□□□□□ -0.58
CLN3-222	ENST00000566083	PEF1	Q9UBV8	284 aa	Known RBP	11.44	□□□□□ -0.58
CLN3-222	ENST00000566083		A0A075B6Q4	140 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	ACTL6B	O94805	426 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	ZNF343	Q6P1L6	599 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	IZUMO2	Q6UXV1	221 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	H1FOO	Q8IZA3	346 aa	Predicted RBP	11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	OR9G4	Q8NGQ1	327 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	SNAPC3	Q92966	411 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	DCSTAMP	Q9H295	470 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	COA4	Q9NYJ1	87 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	SIGLEC8	Q9NYZ4	499 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	RAB26	Q9ULW5	256 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083		A0A0B4J203	849 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	DUT	P33316	252 aa	Known RBP	11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	OR10A3	P58181	314 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	GABARAPL2	P60520	117 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	SSBP2	P81877	361 aa	Predicted RBP	11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	PJVK	Q0ZLH3	352 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	OVCH2	Q7RTZ1	564 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	CNBD2	Q96M20	576 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	SPIN2A	Q99865	258 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	SPIN2B	Q9BPZ2	258 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	ATG5	Q9H1Y0	275 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	ZNF230	Q9UIE0	474 aa	Predicted RBP	11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	MRPS7	Q9Y2R9	242 aa	Known RBP	11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	PRELID3B	Q9Y3B1	194 aa		11.43	□□□□□ -0.58
CLN3-222	ENST00000566083	MSGN1	A6NI15	193 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	FAM223B	A6NKX1	122 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	TRIM64C	A6NLI5	447 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	MPPED1	O15442	326 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	AIRE	O43918	545 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	OR2A4	O95047	310 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	CRYZL1	O95825	349 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	OR9G9	P0C7N8	305 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	CD36	P16671	472 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	PLA2G7	Q13093	441 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	PRSS8	Q16651	343 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	RPEL1	Q2QD12	228 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	LCN12	Q6JVE5	192 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	TPRA1	Q86W33	373 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	FAM223A	Q8IWN6	122 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	DDB2	Q92466	427 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	PEMT	Q9UBM1	199 aa		11.42	□□□□□ -0.58
CLN3-222	ENST00000566083	ANKRD34B	A5PLL1	514 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	SRRM4	A7MD48	611 aa	Known RBP	11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	NOTO	A8MTQ0	251 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	IGHV4-30-4	P0DP06	118 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	FGF9	P31371	208 aa	Predicted RBP	11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	TNXA	Q16473	311 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	CDNF	Q49AH0	187 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	HACD4	Q5VWC8	232 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	GTSCR1	Q86UQ5	136 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	SLC25A42	Q86VD7	318 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	MMD2	Q8IY49	270 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	ZNF645	Q8N7E2	425 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	ADAD2	Q8NCV1	583 aa	Known RBP	11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	VSTM2A	Q8TAG5	236 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	SRSF12	Q8WXF0	261 aa	Known RBP	11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	FCGR1B	Q92637	280 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	OR2W1	Q9Y3N9	320 aa		11.41	□□□□□ -0.58
CLN3-222	ENST00000566083	TUSC2	O75896	110 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	LYL1	P12980	280 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	SYNJ2BP	P57105	145 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	CDK10	Q15131	360 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	CASC10	Q5T4H9	136 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	C22orf42	Q6IC83	251 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	CNIH2	Q6PI25	160 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083		Q8N1Y9	231 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083		Q8N402	240 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	OR2K2	Q8NGT1	345 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	MAFIP	Q8WZ33	124 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	CITED4	Q96RK1	184 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	TM2D3	Q9BRN9	247 aa		11.4	□□□□□ -0.58
CLN3-222	ENST00000566083	DCUN1D5	Q9BTE7	237 aa		11.4	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms