RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 HUWE1Q7Z6Z7 4374 aaKnown RBP14.35□□□□□ -0.11
CLN3-218ENST00000565688 RAB27BO00194 218 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 MYL9P24844 172 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 TALDO1P37837 337 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 HSPA13P48723 471 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 CASC10Q5T4H9 136 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 Q6ZS49 121 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 SGPP2Q8IWX5 399 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 TEX45Q8NA69 505 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 BVESQ8NE79 360 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 USMG5Q96IX5 58 aa14.34□□□□□ -0.11
CLN3-218ENST00000565688 A0A075B6Q4 140 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 ANKRD34BA5PLL1 514 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 A8MZ25 164 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 IGHV4-30-4P0DP06 118 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 OR10A3P58181 314 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 ARFRP1Q13795 201 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 ARL6IP1Q15041 203 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 SSX1Q16384 188 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 TATDN3Q17R31 274 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 VMA21Q3ZAQ7 101 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 Q8N1Y9 231 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 OR9G4Q8NGQ1 327 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 PHB2Q99623 299 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 NDUFB11Q9NX14 153 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 COA4Q9NYJ1 87 aa14.33□□□□□ -0.12
CLN3-218ENST00000565688 PEF1Q9UBV8 284 aaKnown RBP14.33□□□□□ -0.12
CLN3-218ENST00000565688 ZNF230Q9UIE0 474 aaPredicted RBP14.33□□□□□ -0.12
CLN3-218ENST00000565688 SRRM4A7MD48 611 aaKnown RBP14.32□□□□□ -0.12
CLN3-218ENST00000565688 H0Y980 276 aa14.32□□□□□ -0.12
CLN3-218ENST00000565688 RAB3BP20337 219 aa14.32□□□□□ -0.12
CLN3-218ENST00000565688 GALP22466 123 aa14.32□□□□□ -0.12
CLN3-218ENST00000565688 UBE2KP61086 200 aa14.32□□□□□ -0.12
CLN3-218ENST00000565688 ZNF343Q6P1L6 599 aa14.32□□□□□ -0.12
CLN3-218ENST00000565688 HAPLN4Q86UW8 402 aa14.32□□□□□ -0.12
CLN3-218ENST00000565688 MAFIPQ8WZ33 124 aa14.32□□□□□ -0.12
CLN3-218ENST00000565688 DDB2Q92466 427 aa14.32□□□□□ -0.12
CLN3-218ENST00000565688 C5orf30Q96GV9 206 aa14.32□□□□□ -0.12
CLN3-218ENST00000565688 TRDV1A0A1B0GX56 115 aa14.31□□□□□ -0.12
CLN3-218ENST00000565688 MSGN1A6NI15 193 aa14.31□□□□□ -0.12
CLN3-218ENST00000565688 CREBL2O60519 120 aaPredicted RBP14.31□□□□□ -0.12
CLN3-218ENST00000565688 LYL1P12980 280 aa14.31□□□□□ -0.12
CLN3-218ENST00000565688 DTYMKP23919 212 aa14.31□□□□□ -0.12
CLN3-218ENST00000565688 DUTP33316 252 aaKnown RBP14.31□□□□□ -0.12
CLN3-218ENST00000565688 PRSS8Q16651 343 aa14.31□□□□□ -0.12
CLN3-218ENST00000565688 H1FOOQ8IZA3 346 aaPredicted RBP14.31□□□□□ -0.12
CLN3-218ENST00000565688 OSR1Q8TAX0 266 aaPredicted RBP14.31□□□□□ -0.12
CLN3-218ENST00000565688 CITED4Q96RK1 184 aa14.31□□□□□ -0.12
CLN3-218ENST00000565688 TM2D3Q9BRN9 247 aa14.31□□□□□ -0.12
CLN3-218ENST00000565688 C19orf73Q9NVV2 129 aa14.31□□□□□ -0.12
CLN3-218ENST00000565688 DNAH7Q8WXX0 4024 aa14.31□□□□□ -0.12
CLN3-218ENST00000565688 SHISA3A0PJX4 238 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 CRYZL1O95825 349 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 OR9G9P0C7N8 305 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 SYNJ2BPP57105 145 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 DYRK1AQ13627 763 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 MRGPRG-AS1Q2M3A8 158 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 IL34Q6ZMJ4 242 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 ADAD2Q8NCV1 583 aaKnown RBP14.3□□□□□ -0.12
CLN3-218ENST00000565688 CNBD2Q96M20 576 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 ATG5Q9H1Y0 275 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 SIGLEC8Q9NYZ4 499 aa14.3□□□□□ -0.12
CLN3-218ENST00000565688 MPPED1O15442 326 aa14.29□□□□□ -0.12
CLN3-218ENST00000565688 CTXN2P0C2S0 81 aa14.29□□□□□ -0.12
CLN3-218ENST00000565688 TNXAQ16473 311 aa14.29□□□□□ -0.12
CLN3-218ENST00000565688 RPEL1Q2QD12 228 aa14.29□□□□□ -0.12
CLN3-218ENST00000565688 IZUMO2Q6UXV1 221 aa14.29□□□□□ -0.12
CLN3-218ENST00000565688 SRSF12Q8WXF0 261 aaKnown RBP14.29□□□□□ -0.12
CLN3-218ENST00000565688 SNAPC3Q92966 411 aa14.29□□□□□ -0.12
CLN3-218ENST00000565688 PALMDQ9NP74 551 aa14.29□□□□□ -0.12
CLN3-218ENST00000565688 A0A0B4J203 849 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 FAM223BA6NKX1 122 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 LINC00473A8K010 186 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 SLC22A5O76082 557 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 ACTL6BO94805 426 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 OR2A4O95047 310 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 APELAP0DMC3 54 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 LCN12Q6JVE5 192 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 GTSCR1Q86UQ5 136 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 FAM223AQ8IWN6 122 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 ACOT12Q8WYK0 555 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 SPIN2AQ99865 258 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 SPIN2BQ9BPZ2 258 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 PRELID3BQ9Y3B1 194 aa14.28□□□□□ -0.12
CLN3-218ENST00000565688 MRPS14O60783 128 aaKnown RBP14.27□□□□□ -0.13
CLN3-218ENST00000565688 DEFA5Q01523 94 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 CDK10Q15131 360 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 CDNFQ49AH0 187 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 C22orf42Q6IC83 251 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 IDO2Q6ZQW0 420 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 Q8N402 240 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 ZNF645Q8N7E2 425 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 DCSTAMPQ9H295 470 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 PEMTQ9UBM1 199 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 MRPS7Q9Y2R9 242 aaKnown RBP14.27□□□□□ -0.13
CLN3-218ENST00000565688 OR2W1Q9Y3N9 320 aa14.27□□□□□ -0.13
CLN3-218ENST00000565688 IGKV1D-8A0A087WSZ0 117 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 AIREO43918 545 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 SCGNO76038 276 aa14.26□□□□□ -0.13
CLN3-218ENST00000565688 TRBV12-3P01733 135 aa14.26□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms