RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 SHOXO15266 292 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 TNFSF12O43508 249 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 GSTZ1O43708 216 aaPredicted RBP13.66□□□□□ -0.22
CLN3-217ENST00000565354 RAB3DO95716 219 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 S100GP29377 79 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 CATR1Q13166 79 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 MSMO1Q15800 293 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 OR2B11Q5JQS5 317 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 KPRPQ5T749 579 aaPredicted RBP13.66□□□□□ -0.22
CLN3-217ENST00000565354 STEAP1BQ6NZ63 245 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 ZNF66Q6ZN08 573 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 FOXRED2Q8IWF2 684 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 HARBI1Q96MB7 349 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 TINAGL1Q9GZM7 467 aaPredicted RBP13.66□□□□□ -0.22
CLN3-217ENST00000565354 FXYD6Q9H0Q3 95 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 PLSCR3Q9NRY6 295 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 SERTAD4Q9NUC0 356 aa13.66□□□□□ -0.22
CLN3-217ENST00000565354 ZNF107Q9UII5 783 aaPredicted RBP13.66□□□□□ -0.22
CLN3-217ENST00000565354 FCGR3BO75015 233 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 CRYZL1O95825 349 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 IGKV1-16P04430 117 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 AKAIN1P0CW23 69 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 PTBP1P26599 531 aaKnown RBP eCLIP13.65□□□□□ -0.22
CLN3-217ENST00000565354 MEF2DQ14814 521 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 C5orf64Q2M2E5 130 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 ZNF660Q6AZW8 331 aaPredicted RBP13.65□□□□□ -0.22
CLN3-217ENST00000565354 LPCAT3Q6P1A2 487 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 ZNF818PQ6ZRF7 136 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 CENPVQ7Z7K6 275 aaPredicted RBP13.65□□□□□ -0.22
CLN3-217ENST00000565354 CMTM1Q8IZ96 169 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 MFSD4AQ8N468 514 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 ARRDC1Q8N5I2 433 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 FAM71E2Q8N5Q1 922 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 NPBQ8NG41 125 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 OR6Q1Q8NGQ2 317 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 SOSTQ9BQB4 213 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 BATF3Q9NR55 127 aa13.65□□□□□ -0.22
CLN3-217ENST00000565354 METTL1Q9UBP6 276 aaKnown RBP13.65□□□□□ -0.22
CLN3-217ENST00000565354 DISC1C4P0D8 188 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 RRHO14718 337 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 NDUFA3O95167 84 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 SPDEFO95238 335 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 IGLV2-14P01704 120 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 PRB2P02812 416 aaPredicted RBP13.64□□□□□ -0.23
CLN3-217ENST00000565354 PGAM2P15259 253 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 KIR2DS2P43631 304 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 LGALS7P47929 136 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 SCGB2B2Q4G0G5 96 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 AADACL3Q5VUY0 350 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 LIN54Q6MZP7 749 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 REC114Q7Z4M0 266 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 CCDC190Q86UF4 302 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 POC5Q8NA72 575 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 DDB2Q92466 427 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 THAP7Q9BT49 309 aaPredicted RBP13.64□□□□□ -0.23
CLN3-217ENST00000565354 FBXL15Q9H469 300 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 DNAH3Q8TD57 4116 aa13.64□□□□□ -0.23
CLN3-217ENST00000565354 A6NHS1 94 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 GPR31O00270 319 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 SLC25A17O43808 307 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 IGHG2P01859 326 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 CD74P04233 296 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 RPL30P62888 115 aaKnown RBP13.63□□□□□ -0.23
CLN3-217ENST00000565354 PSG5Q15238 335 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 VMA21Q3ZAQ7 101 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 TMEM177Q53S58 311 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 SAMD5Q5TGI4 173 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 Q8N402 240 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 OR51H1Q8NH63 302 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 OR4S2Q8NH73 311 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 ABHD5Q8WTS1 349 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 CLCC1Q96S66 551 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 GPHA2Q96T91 129 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 V9GYH0 126 aa13.63□□□□□ -0.23
CLN3-217ENST00000565354 AP4M1O00189 453 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 HLA-DRB1P01911 266 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 GNRHRP30968 328 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 INPP1P49441 399 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 PPP5CP53041 499 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 AP3S2P59780 193 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 SLC38A6Q8IZM9 456 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 OR4D10Q8NGI6 311 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 OSR1Q8TAX0 266 aaPredicted RBP13.62□□□□□ -0.23
CLN3-217ENST00000565354 CHPT1Q8WUD6 406 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 LINC00527Q9UJ94 153 aa13.62□□□□□ -0.23
CLN3-217ENST00000565354 ANKRD20A5PA0PJZ0 165 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 FBXO24O75426 580 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 OPN1MWP04001 364 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 RLN1P04808 185 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 OPN1MW2P0DN77 364 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 OPN1MW3P0DN78 364 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 FAUP35544 74 aaKnown RBP13.61□□□□□ -0.23
CLN3-217ENST00000565354 ETV6P41212 452 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 UCP3P55916 312 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 SLC35B1P78383 322 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 EIF4EBP1Q13541 118 aaPredicted RBP13.61□□□□□ -0.23
CLN3-217ENST00000565354 ZNF79Q15937 498 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 CNPY1Q3B7I2 92 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 PHLDA2Q53GA4 152 aa13.61□□□□□ -0.23
CLN3-217ENST00000565354 FAAP20Q6NZ36 180 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms