RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP17.36■□□□□ 0.37
CLN3-215ENST00000565236 TMEM177Q53S58 311 aa17.35■□□□□ 0.37
CLN3-215ENST00000565236 OR5T1Q8NG75 326 aa17.35■□□□□ 0.37
CLN3-215ENST00000565236 C5orf30Q96GV9 206 aa17.35■□□□□ 0.37
CLN3-215ENST00000565236 ADTRPQ96IZ2 230 aa17.35■□□□□ 0.37
CLN3-215ENST00000565236 RHOVQ96L33 236 aa17.35■□□□□ 0.37
CLN3-215ENST00000565236 DAPK2Q9UIK4 370 aa17.35■□□□□ 0.37
CLN3-215ENST00000565236 IGKV1D-8A0A087WSZ0 117 aa17.34■□□□□ 0.37
CLN3-215ENST00000565236 CRYGBP07316 175 aa17.34■□□□□ 0.37
CLN3-215ENST00000565236 HACD4Q5VWC8 232 aa17.34■□□□□ 0.37
CLN3-215ENST00000565236 POC5Q8NA72 575 aa17.34■□□□□ 0.37
CLN3-215ENST00000565236 H3BUA1 57 aa17.33■□□□□ 0.36
CLN3-215ENST00000565236 SCGNO76038 276 aa17.33■□□□□ 0.36
CLN3-215ENST00000565236 CTXN2P0C2S0 81 aa17.33■□□□□ 0.36
CLN3-215ENST00000565236 SSBP2P81877 361 aaPredicted RBP17.33■□□□□ 0.36
CLN3-215ENST00000565236 TMEM68Q96MH6 324 aa17.33■□□□□ 0.36
CLN3-215ENST00000565236 RRP15Q9Y3B9 282 aaKnown RBP17.33■□□□□ 0.36
CLN3-215ENST00000565236 TENM3Q9P273 2699 aa17.32■□□□□ 0.36
CLN3-215ENST00000565236 A0A0G2JLM5 398 aa17.32■□□□□ 0.36
CLN3-215ENST00000565236 C13orf42A0A1B0GVH6 325 aa17.32■□□□□ 0.36
CLN3-215ENST00000565236 SRRM4A7MD48 611 aaKnown RBP17.32■□□□□ 0.36
CLN3-215ENST00000565236 J3QRK9 145 aa17.32■□□□□ 0.36
CLN3-215ENST00000565236 DUTP33316 252 aaKnown RBP17.32■□□□□ 0.36
CLN3-215ENST00000565236 PITPNAQ00169 270 aa17.32■□□□□ 0.36
CLN3-215ENST00000565236 ACSM6Q6P461 480 aa17.32■□□□□ 0.36
CLN3-215ENST00000565236 WWC2-AS2Q96NR7 200 aa17.32■□□□□ 0.36
CLN3-215ENST00000565236 DCSTAMPQ9H295 470 aa17.32■□□□□ 0.36
CLN3-215ENST00000565236 VMA21Q3ZAQ7 101 aa17.31■□□□□ 0.36
CLN3-215ENST00000565236 SFXN4Q6P4A7 337 aa17.31■□□□□ 0.36
CLN3-215ENST00000565236 ZNF773Q6PK81 442 aa17.31■□□□□ 0.36
CLN3-215ENST00000565236 TEX45Q8NA69 505 aa17.31■□□□□ 0.36
CLN3-215ENST00000565236 DDB2Q92466 427 aa17.31■□□□□ 0.36
CLN3-215ENST00000565236 OR4C12Q96R67 309 aa17.31■□□□□ 0.36
CLN3-215ENST00000565236 OR51E2Q9H255 320 aa17.31■□□□□ 0.36
CLN3-215ENST00000565236 SMAD5-AS1Q9Y6J3 95 aa17.31■□□□□ 0.36
CLN3-215ENST00000565236 TMEM235A6NFC5 223 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 LINC00473A8K010 186 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 CRYZL1O95825 349 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 SDC2P34741 201 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 GNG2P59768 71 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 OR6Q1Q8NGQ2 317 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 LGALS14Q8TCE9 139 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 NUDCD2Q8WVJ2 157 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 PHB2Q99623 299 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 RANGRFQ9HD47 186 aaPredicted RBP17.3■□□□□ 0.36
CLN3-215ENST00000565236 OR2W1Q9Y3N9 320 aa17.3■□□□□ 0.36
CLN3-215ENST00000565236 SPNP16150 400 aa17.29■□□□□ 0.36
CLN3-215ENST00000565236 NFYAP23511 347 aaPredicted RBP17.29■□□□□ 0.36
CLN3-215ENST00000565236 UBE2KP61086 200 aa17.29■□□□□ 0.36
CLN3-215ENST00000565236 MXD1Q05195 221 aa17.29■□□□□ 0.36
CLN3-215ENST00000565236 CNIH2Q6PI25 160 aa17.29■□□□□ 0.36
CLN3-215ENST00000565236 ZNF645Q8N7E2 425 aa17.29■□□□□ 0.36
CLN3-215ENST00000565236 OSR1Q8TAX0 266 aaPredicted RBP17.29■□□□□ 0.36
CLN3-215ENST00000565236 ASCL2Q99929 193 aa17.29■□□□□ 0.36
CLN3-215ENST00000565236 DCUN1D5Q9BTE7 237 aa17.29■□□□□ 0.36
CLN3-215ENST00000565236 ELOVL1Q9BW60 279 aa17.29■□□□□ 0.36
CLN3-215ENST00000565236 U3KQK5 164 aa17.29■□□□□ 0.36
CLN3-215ENST00000565236 MSGN1A6NI15 193 aa17.28■□□□□ 0.36
CLN3-215ENST00000565236 SLC22A5O76082 557 aa17.28■□□□□ 0.36
CLN3-215ENST00000565236 HLA-DQB1P01920 261 aa17.28■□□□□ 0.36
CLN3-215ENST00000565236 TNXAQ16473 311 aa17.28■□□□□ 0.36
CLN3-215ENST00000565236 PRSS8Q16651 343 aa17.28■□□□□ 0.36
CLN3-215ENST00000565236 TINAGL1Q9GZM7 467 aaPredicted RBP17.28■□□□□ 0.36
CLN3-215ENST00000565236 RHBDL2Q9NX52 303 aa17.28■□□□□ 0.36
CLN3-215ENST00000565236 COA4Q9NYJ1 87 aa17.28■□□□□ 0.36
CLN3-215ENST00000565236 PRELID3BQ9Y3B1 194 aa17.28■□□□□ 0.36
CLN3-215ENST00000565236 TNCP24821 2201 aa17.27■□□□□ 0.36
CLN3-215ENST00000565236 LOC100506127A0A0U1RQW1 187 aa17.27■□□□□ 0.36
CLN3-215ENST00000565236 ANKRD34BA5PLL1 514 aa17.27■□□□□ 0.36
CLN3-215ENST00000565236 TUSC2O75896 110 aa17.27■□□□□ 0.36
CLN3-215ENST00000565236 APELAP0DMC3 54 aa17.27■□□□□ 0.36
CLN3-215ENST00000565236 ZP3P21754 424 aa17.27■□□□□ 0.36
CLN3-215ENST00000565236 IDO2Q6ZQW0 420 aa17.27■□□□□ 0.36
CLN3-215ENST00000565236 SSX5O60225 188 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 FCGR3BO75015 233 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 BRI3O95415 125 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 CLEC2LP0C7M8 214 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 CD36P16671 472 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 AADACP22760 399 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 MRGPRG-AS1Q2M3A8 158 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 KCTD9Q7L273 389 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 ACOT12Q8WYK0 555 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 RNF167Q9H6Y7 350 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 ANXA10Q9UJ72 324 aa17.26■□□□□ 0.35
CLN3-215ENST00000565236 RBMX2Q9Y388 322 aaKnown RBP17.26■□□□□ 0.35
CLN3-215ENST00000565236 MPPED1O15442 326 aa17.25■□□□□ 0.35
CLN3-215ENST00000565236 ACTL6BO94805 426 aa17.25■□□□□ 0.35
CLN3-215ENST00000565236 GP9P14770 177 aa17.25■□□□□ 0.35
CLN3-215ENST00000565236 SCAND1P57086 179 aa17.25■□□□□ 0.35
CLN3-215ENST00000565236 NEDD8Q15843 81 aa17.25■□□□□ 0.35
CLN3-215ENST00000565236 IDNKQ5T6J7 187 aa17.25■□□□□ 0.35
CLN3-215ENST00000565236 USMG5Q96IX5 58 aa17.25■□□□□ 0.35
CLN3-215ENST00000565236 MRPS7Q9Y2R9 242 aaKnown RBP17.25■□□□□ 0.35
CLN3-215ENST00000565236 ETV7Q9Y603 341 aa17.25■□□□□ 0.35
CLN3-215ENST00000565236 NBEAL2Q6ZNJ1 2754 aa17.25■□□□□ 0.35
CLN3-215ENST00000565236 TRAV18A0A075B6X5 111 aa17.24■□□□□ 0.35
CLN3-215ENST00000565236 CREBL2O60519 120 aaPredicted RBP17.24■□□□□ 0.35
CLN3-215ENST00000565236 CDK10Q15131 360 aa17.24■□□□□ 0.35
CLN3-215ENST00000565236 ANKRD13BQ86YJ7 626 aa17.24■□□□□ 0.35
CLN3-215ENST00000565236 OR5H6Q8NGV6 325 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms