RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 USMG5Q96IX5 58 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 PHB2Q99623 299 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 RETNQ9HD89 108 aa12.81□□□□□ -0.36
CLN3-211ENST00000564091 TMEM272A0A1B0GTI8 110 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 CASQ2O14958 399 aaPredicted RBP12.8□□□□□ -0.36
CLN3-211ENST00000564091 DENRO43583 198 aaKnown RBP12.8□□□□□ -0.36
CLN3-211ENST00000564091 PRH1P02810 166 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 IFNA6P05013 189 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 CALRP27797 417 aaKnown RBP12.8□□□□□ -0.36
CLN3-211ENST00000564091 TPBGQ13641 420 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 LCN12Q6JVE5 192 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 IDO2Q6ZQW0 420 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 Q8N402 240 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 ADAD2Q8NCV1 583 aaKnown RBP12.8□□□□□ -0.36
CLN3-211ENST00000564091 OR10J5Q8NHC4 309 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 SCN3BQ9NY72 215 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 ZNF230Q9UIE0 474 aaPredicted RBP12.8□□□□□ -0.36
CLN3-211ENST00000564091 TNCP24821 2201 aa12.8□□□□□ -0.36
CLN3-211ENST00000564091 TRBV6-7A0A0A0MS04 114 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 ARL6IP5O75915 188 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 FCGR3AP08637 254 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 MRPS15P82914 257 aaKnown RBP12.79□□□□□ -0.36
CLN3-211ENST00000564091 CBX3Q13185 183 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 TNXAQ16473 311 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 PRSS8Q16651 343 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 RTL8BQ17RB0 113 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 HES5Q5TA89 166 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 SNAPC3Q92966 411 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 RAB3CQ96E17 227 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 CABLES2Q9BTV7 478 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 PLEKHA3Q9HB20 300 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 SIGLEC8Q9NYZ4 499 aa12.79□□□□□ -0.36
CLN3-211ENST00000564091 RBM7Q9Y580 266 aaKnown RBP12.79□□□□□ -0.36
CLN3-211ENST00000564091 OR9G9P0C7N8 305 aa12.78□□□□□ -0.36
CLN3-211ENST00000564091 GNB3P16520 340 aa12.78□□□□□ -0.36
CLN3-211ENST00000564091 MECP2P51608 486 aaKnown RBP12.78□□□□□ -0.36
CLN3-211ENST00000564091 RHOGP84095 191 aa12.78□□□□□ -0.36
CLN3-211ENST00000564091 FABP5Q01469 135 aa12.78□□□□□ -0.36
CLN3-211ENST00000564091 FAM110AQ9BQ89 295 aa12.78□□□□□ -0.36
CLN3-211ENST00000564091 AKIP1Q9NQ31 210 aa12.78□□□□□ -0.36
CLN3-211ENST00000564091 RAB22AQ9UL26 194 aa12.78□□□□□ -0.36
CLN3-211ENST00000564091 V9GY05 133 aa12.78□□□□□ -0.36
CLN3-211ENST00000564091 A0A075B6Q4 140 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 A0A0B4J203 849 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 BMPR1BO00238 502 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 MPPED1O15442 326 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 OR2A4O95047 310 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 CRYZL1O95825 349 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 DUTP33316 252 aaKnown RBP12.77□□□□□ -0.37
CLN3-211ENST00000564091 UBE2KP61086 200 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 TAGLNQ01995 201 aaKnown RBP12.77□□□□□ -0.37
CLN3-211ENST00000564091 ZNF45Q02386 682 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 VMA21Q3ZAQ7 101 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 CD300EQ496F6 205 aaPredicted RBP12.77□□□□□ -0.37
CLN3-211ENST00000564091 TEX45Q8NA69 505 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 SRSF12Q8WXF0 261 aaKnown RBP12.77□□□□□ -0.37
CLN3-211ENST00000564091 ACOT12Q8WYK0 555 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 DDB2Q92466 427 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 PEMTQ9UBM1 199 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 CEPT1Q9Y6K0 416 aa12.77□□□□□ -0.37
CLN3-211ENST00000564091 SHISA3A0PJX4 238 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 LINC00473A8K010 186 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 J3QRK9 145 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 RRASP10301 218 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 CD81P60033 236 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 ATP5G2Q06055 141 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 EXOSC2Q13868 293 aaKnown RBP12.76□□□□□ -0.37
CLN3-211ENST00000564091 TRAM1Q15629 374 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 LINC00322Q6ZN03 302 aaPredicted RBP12.76□□□□□ -0.37
CLN3-211ENST00000564091 GINS4Q9BRT9 223 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 HIPK2Q9H2X6 1198 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 VCXQ9H320 206 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 DUSP21Q9H596 190 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 ALMS1Q8TCU4 4167 aa12.76□□□□□ -0.37
CLN3-211ENST00000564091 IGKV1D-8A0A087WSZ0 117 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 ZNF785A8K8V0 405 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 MFNGO00587 321 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 CD7P09564 240 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 PSMA1P25786 263 aaKnown RBP12.75□□□□□ -0.37
CLN3-211ENST00000564091 MAP2K4P45985 399 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 OR10A3P58181 314 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 MLLT11Q13015 90 aaPredicted RBP12.75□□□□□ -0.37
CLN3-211ENST00000564091 C10orf55Q5SWW7 151 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 DEFB125Q8N687 156 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 OR10R2Q8NGX6 335 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 NEURL2Q9BR09 285 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 CCDC90BQ9GZT6 254 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 ZNF430Q9H8G1 570 aaPredicted RBP12.75□□□□□ -0.37
CLN3-211ENST00000564091 TPRKBQ9Y3C4 175 aa12.75□□□□□ -0.37
CLN3-211ENST00000564091 FAM223BA6NKX1 122 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 RAB27BO00194 218 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 RGS10O43665 173 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 TPPPO94811 219 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 DIRAS3O95661 229 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 HIST1H1DP16402 221 aaKnown RBP12.74□□□□□ -0.37
CLN3-211ENST00000564091 EDN2P20800 178 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 PSMD7P51665 324 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 FAM223AQ8IWN6 122 aa12.74□□□□□ -0.37
CLN3-211ENST00000564091 H1FOOQ8IZA3 346 aaPredicted RBP12.74□□□□□ -0.37
CLN3-211ENST00000564091 OR2K2Q8NGT1 345 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms