RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 RHOVQ96L33 236 aa14.57□□□□□ -0.08
VPS35-202ENST00000561713 TRBV6-7A0A0A0MS04 114 aa14.56□□□□□ -0.08
VPS35-202ENST00000561713 J3QRK9 145 aa14.56□□□□□ -0.08
VPS35-202ENST00000561713 GADD45AP24522 165 aa14.56□□□□□ -0.08
VPS35-202ENST00000561713 SERPINB10P48595 397 aa14.56□□□□□ -0.08
VPS35-202ENST00000561713 OR6Q1Q8NGQ2 317 aa14.56□□□□□ -0.08
VPS35-202ENST00000561713 GINS4Q9BRT9 223 aa14.56□□□□□ -0.08
VPS35-202ENST00000561713 SLA2Q9H6Q3 261 aa14.56□□□□□ -0.08
VPS35-202ENST00000561713 ADAM30Q9UKF2 790 aa14.56□□□□□ -0.08
VPS35-202ENST00000561713 TRAV1-2A0A0B4J238 106 aa14.55□□□□□ -0.08
VPS35-202ENST00000561713 ERICH4A6NGS2 130 aa14.55□□□□□ -0.08
VPS35-202ENST00000561713 SRRM4A7MD48 611 aaKnown RBP14.55□□□□□ -0.08
VPS35-202ENST00000561713 PDCD5O14737 125 aa14.55□□□□□ -0.08
VPS35-202ENST00000561713 SHOXO15266 292 aa14.55□□□□□ -0.08
VPS35-202ENST00000561713 CRYGBP07316 175 aa14.55□□□□□ -0.08
VPS35-202ENST00000561713 RAB3BP20337 219 aa14.55□□□□□ -0.08
VPS35-202ENST00000561713 ARFRP1Q13795 201 aa14.55□□□□□ -0.08
VPS35-202ENST00000561713 ADAMTSL5Q6ZMM2 481 aa14.55□□□□□ -0.08
VPS35-202ENST00000561713 IDO2Q6ZQW0 420 aa14.55□□□□□ -0.08
VPS35-202ENST00000561713 RBM7Q9Y580 266 aaKnown RBP14.55□□□□□ -0.08
VPS35-202ENST00000561713 C13orf42A0A1B0GVH6 325 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 TRBV12-3P01733 135 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 CD40LGP29965 261 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 PSMD7P51665 324 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 MRGPRG-AS1Q2M3A8 158 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 OR4C12Q96R67 309 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 TM2D3Q9BRN9 247 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 ATG5Q9H1Y0 275 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 VCX3BQ9H321 246 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 BLOC1S6Q9UL45 172 aa14.54□□□□□ -0.08
VPS35-202ENST00000561713 TRDV1A0A1B0GX56 115 aa14.53□□□□□ -0.08
VPS35-202ENST00000561713 LINC00473A8K010 186 aa14.53□□□□□ -0.08
VPS35-202ENST00000561713 RBMXL2O75526 392 aaKnown RBP14.53□□□□□ -0.08
VPS35-202ENST00000561713 CRYZL1O95825 349 aa14.53□□□□□ -0.08
VPS35-202ENST00000561713 RAB6AP20340 208 aa14.53□□□□□ -0.08
VPS35-202ENST00000561713 HSPA13P48723 471 aa14.53□□□□□ -0.08
VPS35-202ENST00000561713 TAGLNQ01995 201 aaKnown RBP14.53□□□□□ -0.08
VPS35-202ENST00000561713 RTL8BQ17RB0 113 aa14.53□□□□□ -0.08
VPS35-202ENST00000561713 H1FOOQ8IZA3 346 aaPredicted RBP14.53□□□□□ -0.08
VPS35-202ENST00000561713 EDA2RQ9HAV5 297 aa14.53□□□□□ -0.08
VPS35-202ENST00000561713 COA4Q9NYJ1 87 aa14.53□□□□□ -0.08
VPS35-202ENST00000561713 TALDO1P37837 337 aa14.52□□□□□ -0.09
VPS35-202ENST00000561713 CBX3Q13185 183 aa14.52□□□□□ -0.09
VPS35-202ENST00000561713 TNXAQ16473 311 aa14.52□□□□□ -0.09
VPS35-202ENST00000561713 TMEM177Q53S58 311 aa14.52□□□□□ -0.09
VPS35-202ENST00000561713 OR2B11Q5JQS5 317 aa14.52□□□□□ -0.09
VPS35-202ENST00000561713 NUDCD2Q8WVJ2 157 aa14.52□□□□□ -0.09
VPS35-202ENST00000561713 DDB2Q92466 427 aa14.52□□□□□ -0.09
VPS35-202ENST00000561713 PHB2Q99623 299 aa14.52□□□□□ -0.09
VPS35-202ENST00000561713 PLECQ15149 4684 aaKnown RBP14.52□□□□□ -0.09
VPS35-202ENST00000561713 IGHV4-30-4P0DP06 118 aa14.51□□□□□ -0.09
VPS35-202ENST00000561713 PSMB9P28065 219 aa14.51□□□□□ -0.09
VPS35-202ENST00000561713 DUTP33316 252 aaKnown RBP14.51□□□□□ -0.09
VPS35-202ENST00000561713 DYRK1AQ13627 763 aa14.51□□□□□ -0.09
VPS35-202ENST00000561713 C10orf55Q5SWW7 151 aa14.51□□□□□ -0.09
VPS35-202ENST00000561713 ACOT12Q8WYK0 555 aa14.51□□□□□ -0.09
VPS35-202ENST00000561713 ISOC1Q96CN7 298 aa14.51□□□□□ -0.09
VPS35-202ENST00000561713 STUB1Q9UNE7 303 aa14.51□□□□□ -0.09
VPS35-202ENST00000561713 METTL21EPA6NDL7 271 aa14.5□□□□□ -0.09
VPS35-202ENST00000561713 TMEM235A6NFC5 223 aa14.5□□□□□ -0.09
VPS35-202ENST00000561713 H3BUA1 57 aa14.5□□□□□ -0.09
VPS35-202ENST00000561713 PRH1P02810 166 aa14.5□□□□□ -0.09
VPS35-202ENST00000561713 NFYAP23511 347 aaPredicted RBP14.5□□□□□ -0.09
VPS35-202ENST00000561713 LGALS7P47929 136 aa14.5□□□□□ -0.09
VPS35-202ENST00000561713 SYNJ2BPP57105 145 aa14.5□□□□□ -0.09
VPS35-202ENST00000561713 ANKRD13BQ86YJ7 626 aa14.5□□□□□ -0.09
VPS35-202ENST00000561713 Q8N1Y9 231 aa14.5□□□□□ -0.09
VPS35-202ENST00000561713 ELOVL1Q9BW60 279 aa14.5□□□□□ -0.09
VPS35-202ENST00000561713 TINAGL1Q9GZM7 467 aaPredicted RBP14.5□□□□□ -0.09
VPS35-202ENST00000561713 RANGRFQ9HD47 186 aaPredicted RBP14.5□□□□□ -0.09
VPS35-202ENST00000561713 DIRAS3O95661 229 aa14.49□□□□□ -0.09
VPS35-202ENST00000561713 IGLV1-51P01701 117 aa14.49□□□□□ -0.09
VPS35-202ENST00000561713 SAA1P0DJI8 122 aaPredicted RBP14.49□□□□□ -0.09
VPS35-202ENST00000561713 ZP3P21754 424 aa14.49□□□□□ -0.09
VPS35-202ENST00000561713 GABARAPL2P60520 117 aa14.49□□□□□ -0.09
VPS35-202ENST00000561713 PRSS8Q16651 343 aa14.49□□□□□ -0.09
VPS35-202ENST00000561713 VMA21Q3ZAQ7 101 aa14.49□□□□□ -0.09
VPS35-202ENST00000561713 LGALS14Q8TCE9 139 aa14.49□□□□□ -0.09
VPS35-202ENST00000561713 SRSF12Q8WXF0 261 aaKnown RBP14.49□□□□□ -0.09
VPS35-202ENST00000561713 ST6GALNAC5Q9BVH7 336 aa14.49□□□□□ -0.09
VPS35-202ENST00000561713 TXNL4BQ9NX01 149 aaKnown RBP14.49□□□□□ -0.09
VPS35-202ENST00000561713 IGKV1D-13A0A0B4J2D9 117 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 MSGN1A6NI15 193 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 MPPED1O15442 326 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 IGKV1-13P0DP09 117 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 RANBP1P43487 201 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 UBE2KP61086 200 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 CDNFQ49AH0 187 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 C19orf35Q6ZS72 473 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 ADAD2Q8NCV1 583 aaKnown RBP14.48□□□□□ -0.09
VPS35-202ENST00000561713 ZNF430Q9H8G1 570 aaPredicted RBP14.48□□□□□ -0.09
VPS35-202ENST00000561713 DAPK2Q9UIK4 370 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 RAB26Q9ULW5 256 aa14.48□□□□□ -0.09
VPS35-202ENST00000561713 A0A0G2JLM5 398 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 FCGR3BO75015 233 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 DTYMKP23919 212 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 RPL30P62888 115 aaKnown RBP14.47□□□□□ -0.09
VPS35-202ENST00000561713 UBE2UQ5VVX9 321 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 Q6ZS49 121 aa14.47□□□□□ -0.09
VPS35-202ENST00000561713 KCTD9Q7L273 389 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 71.1 ms