RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 LINC00311Q8N616 119 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 KIR3DL3Q8N743 410 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 ZNF436-AS1Q8NC38 126 aaPredicted RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 ZNF596Q8TC21 504 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 SFT2D1Q8WV19 159 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 MSI2Q96DH6 328 aaKnown RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 TMEM222Q9H0R3 208 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 MMP26Q9NRE1 261 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 ZFP57Q9NU63 452 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 ZNRD1Q9P1U0 126 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 POLR3KQ9Y2Y1 108 aaPredicted RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 PTPN13Q12923 2485 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 SAA2-SAA4A0A096LPE2 208 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 IGHV2-26A0A0B4J1V2 119 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 M0R1X1 148 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 WRBO00258 174 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 BCL2L11O43521 198 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 SIX6O95475 246 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 SAA2P0DJI9 122 aaPredicted RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 ZNF16P17020 682 aaPredicted RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 HLA-GP17693 338 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 USF1P22415 310 aaPredicted RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 UCP1P25874 307 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 DLX1P56177 255 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 RAB5BP61020 215 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 RPL30P62888 115 aaKnown RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 SRPXP78539 464 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 CATR1Q13166 79 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 C1orf229Q6ZS94 237 aaPredicted RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 C1orf122Q6ZSJ8 110 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 LGI3Q8N145 548 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 LRTM2Q8N967 370 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 HSD17B10Q99714 261 aaKnown RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 METTL8Q9H825 291 aaKnown RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 RAB18Q9NP72 206 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 LIN7CQ9NUP9 197 aaKnown RBP9.16□□□□□ -0.94
USP3-218ENST00000560202 KPTNQ9Y664 436 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 APCP25054 2843 aa9.16□□□□□ -0.94
USP3-218ENST00000560202 ASH1LQ9NR48 2969 aaKnown RBP9.15□□□□□ -0.94
USP3-218ENST00000560202 CCSO14618 274 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 ADAP1O75689 374 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 CDS2O95674 445 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 RLN2P04090 185 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 FABP1P07148 127 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 PRTN3P24158 256 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 DUTP33316 252 aaKnown RBP9.15□□□□□ -0.94
USP3-218ENST00000560202 H2BFSP57053 126 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 LINC00205P59089 165 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 PRB3Q04118 309 aaPredicted RBP9.15□□□□□ -0.94
USP3-218ENST00000560202 Q5PR19 223 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 OR5M8Q8NGP6 311 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 OR10X1Q8NGY0 326 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 TCTEX1D2Q8WW35 142 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 TNFRSF14Q92956 283 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 TMEM56Q96MV1 263 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 S1PR3Q99500 378 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 CLEC7AQ9BXN2 247 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 LPAR2Q9HBW0 351 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 SIRT7Q9NRC8 400 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 TMEM56-RWDD3S4R434 201 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 CSMD2Q7Z408 3487 aa9.15□□□□□ -0.94
USP3-218ENST00000560202 NBPF19A0A087WUL8 3843 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 LINC00473A8K010 186 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 IGLV1-47P01700 117 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 SERPINE2P07093 398 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 HOXB5P09067 269 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 COX7A1P24310 79 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 DVL1P1P54792 670 aaPredicted RBP9.14□□□□□ -0.95
USP3-218ENST00000560202 PRRX1P54821 245 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 RNF212Q495C1 297 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 ZNF585BQ52M93 769 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 FAM209BQ5JX69 171 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 DCAF12L2Q5VW00 463 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 TMEM268Q5VZI3 342 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 PRSS57Q6UWY2 283 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 IL34Q6ZMJ4 242 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 ZNF546Q86UE3 836 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 ZNF695Q8IW36 515 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 OR13D1Q8NGV5 346 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 C18orf12Q96KH6 178 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 SEC11CQ9BY50 192 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 SIRPDQ9H106 197 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 OR51M1Q9H341 326 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 UNKLQ9H9P5 680 aaKnown RBP9.14□□□□□ -0.95
USP3-218ENST00000560202 POLQO75417 2590 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 ABCA12Q86UK0 2595 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 ARID1AO14497 2285 aa9.14□□□□□ -0.95
USP3-218ENST00000560202 VPS13CQ709C8 3753 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 A0A096LNT2 108 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 C13orf42A0A1B0GVH6 325 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 SPDEFO95238 335 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 NCR3LG1Q68D85 454 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 ZNF833PQ6ZTB9 187 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 LYZL2Q7Z4W2 148 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 VMO1Q7Z5L0 202 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 SELENOHQ8IZQ5 122 aaKnown RBP9.13□□□□□ -0.95
USP3-218ENST00000560202 PNKDQ8N490 385 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 TCTEX1D1Q8N7M0 179 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 SLC35G3Q8N808 338 aa9.13□□□□□ -0.95
USP3-218ENST00000560202 BEND2Q8NDZ0 799 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms