RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 IGKV1D-33P01593 117 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 IGKV1-33P01594 117 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 MT-ND6P03923 174 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 FAM90A15PP0C7V4 464 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 FAM90A13PP0C7W8 464 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 FAM90A14PP0C7W9 464 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 FAM90A24PP0C7X0 464 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 COX5AP20674 150 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 F2RP25116 425 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 APOBEC3AP31941 199 aaPredicted RBP9.2□□□□□ -0.94
USP3-206ENST00000558157 PRRX1P54821 245 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 ARL16Q0P5N6 197 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 LRRC10Q5BKY1 277 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 PET117Q6UWS5 81 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 LINC00696Q6ZRV3 163 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 FADS6Q8N9I5 356 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 SGCZQ96LD1 299 aa9.2□□□□□ -0.94
USP3-206ENST00000558157 SLC22A20A6NK97 555 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 SHISA8B8ZZ34 492 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 FAM90A26D6RGX4 464 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 TLX3O43711 291 aaPredicted RBP9.19□□□□□ -0.94
USP3-206ENST00000558157 PAGE4O60829 102 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 TOX4O94842 621 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 CDAP32320 146 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 ARR3P36575 388 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 GABRA2P47869 451 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 CYB561P49447 251 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 TCF23Q7RTU1 214 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 HAPLN4Q86UW8 402 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 ZIC4Q8N9L1 334 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 OR10G9Q8NGN4 311 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 OR10G7Q8NGN6 311 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 KCNS1Q96KK3 526 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 GNB1LQ9BYB4 327 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 NRN1Q9NPD7 142 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 ABI3Q9P2A4 366 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 TBL2Q9Y4P3 447 aaKnown RBP9.19□□□□□ -0.94
USP3-206ENST00000558157 KIR2DS1A0A191URI9 304 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 DPRXA6NFQ7 191 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 ZNF891A8MT65 544 aaPredicted RBP9.19□□□□□ -0.94
USP3-206ENST00000558157 SIRPB1O00241 398 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 P04436 131 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 SERPINE2P07093 398 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 MSR1P21757 451 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 GUCA1AP43080 201 aaPredicted RBP9.19□□□□□ -0.94
USP3-206ENST00000558157 KIR2DS4P43632 304 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 SLC38A11Q08AI6 406 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 KIR2DS1Q14954 304 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 VAMP3Q15836 100 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 DMRTC1Q5HYR2 192 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 MUC15Q8N387 334 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 DYRK2Q92630 601 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 SLC25A22Q9H936 323 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 PLA2G3Q9NZ20 509 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 IL36BQ9NZH7 164 aa9.19□□□□□ -0.94
USP3-206ENST00000558157 ZFHX4Q86UP3 3567 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 J3QR06 171 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 ANGPTL7O43827 346 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 PGLYRP1O75594 196 aaPredicted RBP9.18□□□□□ -0.94
USP3-206ENST00000558157 NXPH3O95157 252 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 NPPCP23582 126 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 HINT1P49773 126 aaPredicted RBP9.18□□□□□ -0.94
USP3-206ENST00000558157 LDLRAD2Q5SZI1 272 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 SPINK14Q6IE38 97 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 FAM180AQ6UWF9 173 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 OR10G8Q8NGN5 311 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 BORCS8Q96FH0 119 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 RBM24Q9BX46 236 aaKnown RBP9.18□□□□□ -0.94
USP3-206ENST00000558157 ZNF442Q9H7R0 627 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 CLN8Q9UBY8 286 aa9.18□□□□□ -0.94
USP3-206ENST00000558157 UBE2L5PA0A1B0GUS4 154 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 CD300LBA8K4G0 201 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 KLK10O43240 276 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 SPRY1O43609 319 aaPredicted RBP9.17□□□□□ -0.94
USP3-206ENST00000558157 TRAF3IP2O43734 574 aaPredicted RBP9.17□□□□□ -0.94
USP3-206ENST00000558157 NEURL1O76050 574 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 S1PR2O95136 353 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 CBLN1P23435 193 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 TIMP3P35625 211 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 RBM11P57052 281 aaKnown RBP9.17□□□□□ -0.94
USP3-206ENST00000558157 ZNF90Q03938 601 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 MFAP5Q13361 173 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 HLA-DRB5Q30154 266 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 PIGYQ3MUY2 71 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 RAET1LQ5VY80 246 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 ACSM6Q6P461 480 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 WDR73Q6P4I2 378 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 Q6ZPA2 131 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 SPTSSAQ969W0 71 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 DEPPQ9NTK1 212 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 RPH3ALQ9UNE2 315 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 RBM7Q9Y580 266 aaKnown RBP9.17□□□□□ -0.94
USP3-206ENST00000558157 C1QTNF9BB2RNN3 333 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 F5H5K5 113 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 M0QZ24 198 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 FCN1O00602 326 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 TNFSF12O43508 249 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 NBEAP1P0C6P0 100 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 AMTP48728 403 aa9.17□□□□□ -0.94
USP3-206ENST00000558157 CLDN18P56856 261 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms