RNA–Protein interactions for RNA: ENST00000557657.5

TMEM260-216, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 2,572 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-216ENST00000557657 DUTP33316 252 aaKnown RBP17.59■□□□□ 0.41
TMEM260-216ENST00000557657 FAM27E3Q08E93 113 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 MORN2Q502X0 79 aa17.59■□□□□ 0.41
TMEM260-216ENST00000557657 M0R1X1 148 aa17.58■□□□□ 0.41
TMEM260-216ENST00000557657 ZNF674Q2M3X9 581 aa17.58■□□□□ 0.41
TMEM260-216ENST00000557657 GCSAMLQ5JQS6 135 aa17.58■□□□□ 0.41
TMEM260-216ENST00000557657 DCAF16Q9NXF7 216 aa17.58■□□□□ 0.41
TMEM260-216ENST00000557657 RAB29O14966 203 aa17.58■□□□□ 0.4
TMEM260-216ENST00000557657 IGHV2-5P01817 119 aa17.58■□□□□ 0.4
TMEM260-216ENST00000557657 OR10P1Q8NGE3 313 aa17.58■□□□□ 0.4
TMEM260-216ENST00000557657 ZNF891A8MT65 544 aaPredicted RBP17.57■□□□□ 0.4
TMEM260-216ENST00000557657 FFAR4Q5NUL3 377 aa17.57■□□□□ 0.4
TMEM260-216ENST00000557657 MEGF10Q96KG7 1140 aa17.57■□□□□ 0.4
TMEM260-216ENST00000557657 CEP295Q9C0D2 2601 aa17.57■□□□□ 0.4
TMEM260-216ENST00000557657 APC2O95996 2303 aa17.57■□□□□ 0.4
TMEM260-216ENST00000557657 YIF1AO95070 293 aa17.57■□□□□ 0.4
TMEM260-216ENST00000557657 IFNA17P01571 189 aa17.57■□□□□ 0.4
TMEM260-216ENST00000557657 MDKP21741 143 aaPredicted RBP17.57■□□□□ 0.4
TMEM260-216ENST00000557657 CD81P60033 236 aa17.57■□□□□ 0.4
TMEM260-216ENST00000557657 PKDREJQ9NTG1 2253 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 LOXL3P58215 753 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 SLC35E3Q7Z769 313 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 SNRNP40Q96DI7 357 aaKnown RBP17.56■□□□□ 0.4
TMEM260-216ENST00000557657 HSD17B10Q99714 261 aaKnown RBP17.56■□□□□ 0.4
TMEM260-216ENST00000557657 TMEM147Q9BVK8 224 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 MUC6Q6W4X9 2439 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 TET2Q6N021 2002 aaPredicted RBP17.56■□□□□ 0.4
TMEM260-216ENST00000557657 A0A1B0GWJ7 208 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 C15orf62A8K5M9 175 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 CYB5BO43169 146 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 CRYAAP02489 173 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 ZNF66Q6ZN08 573 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 OR10G4Q8NGN3 311 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 OR10G9Q8NGN4 311 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 OR10G7Q8NGN6 311 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 MALSU1Q96EH3 234 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 NPCDR1Q9BY65 106 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 WASF3Q9UPY6 502 aa17.56■□□□□ 0.4
TMEM260-216ENST00000557657 MAS1LP35410 378 aa17.55■□□□□ 0.4
TMEM260-216ENST00000557657 KLF3P57682 345 aaPredicted RBP17.55■□□□□ 0.4
TMEM260-216ENST00000557657 HTD2P86397 168 aa17.55■□□□□ 0.4
TMEM260-216ENST00000557657 FAM90A1Q86YD7 464 aa17.55■□□□□ 0.4
TMEM260-216ENST00000557657 MRPL37Q9BZE1 423 aaKnown RBP17.55■□□□□ 0.4
TMEM260-216ENST00000557657 CYB5R3P00387 301 aaPredicted RBP17.55■□□□□ 0.4
TMEM260-216ENST00000557657 KIAA0141Q14154 515 aaPredicted RBP17.55■□□□□ 0.4
TMEM260-216ENST00000557657 RPUSD4Q96CM3 377 aaKnown RBP17.55■□□□□ 0.4
TMEM260-216ENST00000557657 ZNRD1Q9P1U0 126 aa17.55■□□□□ 0.4
TMEM260-216ENST00000557657 VAX2Q9UIW0 290 aa17.55■□□□□ 0.4
TMEM260-216ENST00000557657 ADH4P08319 380 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 MRGPRGQ86SM5 289 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 ZGRF1Q86YA3 2104 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 RBMXL3Q8N7X1 1067 aaKnown RBP17.54■□□□□ 0.4
TMEM260-216ENST00000557657 PINX1Q96BK5 328 aaKnown RBP17.54■□□□□ 0.4
TMEM260-216ENST00000557657 IFI27L2Q9H2X8 130 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 A0A087WWC5 75 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 MGST3O14880 152 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 CLN5O75503 358 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 PRAMEF5Q5TYX0 476 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 SNX22Q96L94 193 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 OR6C3Q9NZP0 311 aa17.54■□□□□ 0.4
TMEM260-216ENST00000557657 NKX6-1P78426 367 aaPredicted RBP17.53■□□□□ 0.4
TMEM260-216ENST00000557657 TIMM23BQ5SRD1 257 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 ZCCHC24Q8N2G6 241 aaKnown RBP17.53■□□□□ 0.4
TMEM260-216ENST00000557657 SDF2L1Q9HCN8 221 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 METTL1Q9UBP6 276 aaKnown RBP17.53■□□□□ 0.4
TMEM260-216ENST00000557657 YLPM1P49750 1951 aaKnown RBP17.53■□□□□ 0.4
TMEM260-216ENST00000557657 AP4M1O00189 453 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 RRHO14718 337 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 TRGC2P03986 189 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 MYOD1P15172 320 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 GZMHP20718 246 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 WDR25Q64LD2 544 aaPredicted RBP17.53■□□□□ 0.4
TMEM260-216ENST00000557657 ABHD12Q8N2K0 398 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 RAB24Q969Q5 203 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 PARD6GQ9BYG4 376 aaPredicted RBP17.53■□□□□ 0.4
TMEM260-216ENST00000557657 CALYQ9NYX4 217 aa17.53■□□□□ 0.4
TMEM260-216ENST00000557657 SMCO3A2RU48 225 aa17.52■□□□□ 0.4
TMEM260-216ENST00000557657 KLK10O43240 276 aa17.52■□□□□ 0.4
TMEM260-216ENST00000557657 TUBG1P23258 451 aa17.52■□□□□ 0.4
TMEM260-216ENST00000557657 Q8N7P7 452 aa17.52■□□□□ 0.4
TMEM260-216ENST00000557657 TUBG2Q9NRH3 451 aa17.52■□□□□ 0.4
TMEM260-216ENST00000557657 TRAV38-1A0A0B4J264 116 aa17.52■□□□□ 0.39
TMEM260-216ENST00000557657 NDUFA6P56556 154 aa17.52■□□□□ 0.39
TMEM260-216ENST00000557657 EDARADDQ8WWZ3 215 aa17.52■□□□□ 0.39
TMEM260-216ENST00000557657 GLRXP35754 106 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 MEF2BQ02080 365 aaPredicted RBP17.51■□□□□ 0.39
TMEM260-216ENST00000557657 ADIRFQ15847 76 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 CLEC12BQ2HXU8 276 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 C17orf58Q2M2W7 97 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 C1orf185Q5T7R7 199 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 SPNS3Q6ZMD2 512 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 Q6ZS92 163 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 CENPVQ7Z7K6 275 aaPredicted RBP17.51■□□□□ 0.39
TMEM260-216ENST00000557657 SMIM7Q9BQ49 75 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 SH3BGRL2Q9UJC5 107 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 MMP23AO75900 390 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 LHBP01229 141 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 C4orf17Q53FE4 359 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 CT45A1Q5HYN5 189 aa17.51■□□□□ 0.39
TMEM260-216ENST00000557657 NECAP1Q8NC96 275 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms