RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, human

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-208	ENST00000553868	C1orf229	Q6ZS94	237 aa	Predicted RBP	11.73	□□□□□ -0.53
SHMT2-208	ENST00000553868		Q8N7P7	452 aa		11.73	□□□□□ -0.53
SHMT2-208	ENST00000553868	OR5M8	Q8NGP6	311 aa		11.73	□□□□□ -0.53
SHMT2-208	ENST00000553868	TMEM56	Q96MV1	263 aa		11.73	□□□□□ -0.53
SHMT2-208	ENST00000553868	JMJD8	Q96S16	334 aa		11.73	□□□□□ -0.53
SHMT2-208	ENST00000553868	PDCD10	Q9BUL8	212 aa		11.73	□□□□□ -0.53
SHMT2-208	ENST00000553868	ZNF436	Q9C0F3	470 aa	Predicted RBP	11.73	□□□□□ -0.53
SHMT2-208	ENST00000553868	TMEM56-RWDD3	S4R434	201 aa		11.73	□□□□□ -0.53
SHMT2-208	ENST00000553868	C5orf51	A6NDU8	294 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	RBFOX2	O43251	390 aa	Known RBP eCLIP	11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	TOX4	O94842	621 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	CDS2	O95674	445 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	MSMB	P08118	114 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	CXCL3	P19876	107 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	GATA3	P23771	443 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	COX7A1	P24310	79 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	DUT	P33316	252 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	ZNF137P	P52743	207 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	CYCS	P99999	105 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	HLA-DRB5	Q30154	266 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	RPL39P5	Q59GN2	51 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	TMEM268	Q5VZI3	342 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	ZNF833P	Q6ZTB9	187 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	ODF3L1	Q8IXM7	274 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	TCTE3	Q8IZS6	198 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	SPAG16	Q8N0X2	631 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	OR11H6	Q8NGC7	330 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	RBPMS	Q93062	196 aa	Known RBP	11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	ST6GAL2	Q96JF0	529 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	HIF1AN	Q9NWT6	349 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	TMED3	Q9Y3Q3	217 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	INSIG2	Q9Y5U4	225 aa		11.72	□□□□□ -0.53
SHMT2-208	ENST00000553868	TRAV20	A0A0B4J274	112 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	FAM25E	A8MYX2	175 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	TXNL1	O43396	289 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	OR2A4	O95047	310 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	AVP	P01185	164 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	IGLV1-47	P01700	117 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	HNRNPC	P07910	306 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	HOXB5	P09067	269 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	CEACAM3	P40198	252 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	SRSF4	Q08170	494 aa	Known RBP	11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	SCGB2A2	Q13296	93 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	UTF1	Q5T230	341 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	VMO1	Q7Z5L0	202 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	PNKD	Q8N490	385 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	C5orf30	Q96GV9	206 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	OR2A7	Q96R45	310 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	GPHA2	Q96T91	129 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	SPIN2A	Q99865	258 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	SPIN2B	Q9BPZ2	258 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	ZNF251	Q9BRH9	671 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	SIRPD	Q9H106	197 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	RANGRF	Q9HD47	186 aa	Predicted RBP	11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	SIRT7	Q9NRC8	400 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	MMP26	Q9NRE1	261 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	PRR13	Q9NZ81	148 aa		11.71	□□□□□ -0.53
SHMT2-208	ENST00000553868	C13orf42	A0A1B0GVH6	325 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	APOA2	P02652	100 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	RRAS	P10301	218 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	VDAC1	P21796	283 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	RPL30	P62888	115 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	RTL8B	Q17RB0	113 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	TGIF2LX	Q8IUE1	241 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	SELENOH	Q8IZQ5	122 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	OR4S2	Q8NH73	311 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	RNASE11	Q8TAA1	199 aa	Known RBP	11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	C2orf50	Q96LR7	162 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	DUX5	Q96PT3	197 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	PCGF1	Q9BSM1	259 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	CHIA	Q9BZP6	476 aa		11.7	□□□□□ -0.54
SHMT2-208	ENST00000553868	LINC00473	A8K010	186 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	LEUTX	A8MZ59	168 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	BUB1B-PAK6	H3BSN5	160 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	CCS	O14618	274 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	PROP1	O75360	226 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	ADAP1	O75689	374 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	GAPDH	P04406	335 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	ARG1	P05089	322 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	HTR1D	P28221	377 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	LPAR6	P43657	344 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	PAX8	Q06710	450 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	FGL1	Q08830	312 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	C2orf68	Q2NKX9	166 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	DCAF12L2	Q5VW00	463 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	GGNBP1	Q5YKI7	109 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	THOC7	Q6I9Y2	204 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	DHRS7B	Q6IAN0	325 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	LYZL2	Q7Z4W2	148 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	SLC35G3	Q8N808	338 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	DRAXIN	Q8NBI3	349 aa	Predicted RBP	11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	C22orf15	Q8WYQ4	148 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	ST6GALNAC6	Q969X2	333 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	RRNAD1	Q96FB5	475 aa	Known RBP	11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	AIFM2	Q9BRQ8	373 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	PLEKHA2	Q9HB19	425 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	COMMD9	Q9P000	198 aa		11.69	□□□□□ -0.54
SHMT2-208	ENST00000553868	FCGR3B	O75015	233 aa		11.68	□□□□□ -0.54
SHMT2-208	ENST00000553868	SIX6	O95475	246 aa		11.68	□□□□□ -0.54
SHMT2-208	ENST00000553868	HPRT1	P00492	218 aa		11.68	□□□□□ -0.54

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